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1 # This is a three column tab separated file to define the modules (models)
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2 # for the Effective T3 prediction tool.
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3 #
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4 # Column 1 - Module ID, string that Galaxy will save in its database
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5 # Column 2 - Human readable name, Galaxy will show this in the UI
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6 # Column 3 - Filename, Galaxy will use this when calling the tool
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7 #
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8 #NOTE: In EffectiveT3 v1.0.1, the modules are given as their filename
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9 #(with the JAR extension) but without any path. They are expected to
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10 #be located in a subdirectory called module under the working directory.
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11 #For the galaxy wrapper, we assume this means under the folder where the
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12 #main JAR file is, TTSS_GUI-1.0.1.jar
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13 #
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14 #e.g.
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15 #
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16 # /opt/EffectiveT3/TTSS_GUI-1.0.1.jar
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17 # /opt/EffectiveT3/module/TTSS_STD-1.0.1.jar
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18 # /opt/EffectiveT3/module/TTSS_ANIMAL-1.0.1.jar
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19 # /opt/EffectiveT3/module/TTSS_PLANT-1.0.1.jar
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20 #
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21 #See files ../tools/protein_analysis/effectiveT3.* for more details,
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22 #and http://effectors.org
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23 #
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24 standard Type III Effector prediction with standard set TTSS_STD-1.0.1.jar
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25 animal Type III Effector prediction with animal set TTSS_ANIMAL-1.0.1.jar
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26 plant Type III Effector prediction with plant set TTSS_PLANT-1.0.1.jar
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