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comparison tools/effectiveT3/effectiveT3.xml @ 5:1ea715da1879 draft

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Uploaded v0.0.13, embed citation, relax test for floating point differences
author peterjc
date Tue, 25 Nov 2014 08:28:24 -0500
parents f7ce32e13bc6
children 0f6eb4a75000
comparison
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4:f7ce32e13bc6 5:1ea715da1879
1 <tool id="effectiveT3" name="Effective T3" version="0.0.12"> 1 <tool id="effectiveT3" name="Effective T3" version="0.0.13">
2 <description>Find bacterial effectors in protein sequences</description> 2 <description>Find bacterial effectors in protein sequences</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.0.1">effectiveT3</requirement> 4 <requirement type="package" version="1.0.1">effectiveT3</requirement>
5 </requirements> 5 </requirements>
6 <version_command interpreter="python">effectiveT3.py --version</version_command> 6 <version_command interpreter="python">effectiveT3.py --version</version_command>
45 <tests> 45 <tests>
46 <test> 46 <test>
47 <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta" /> 47 <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta" />
48 <param name="module" value="animal" /> 48 <param name="module" value="animal" />
49 <param name="type" value="selective" /> 49 <param name="type" value="selective" />
50 <output name="tabular_file" file="four_human_proteins.effectiveT3.tabular" ftype="tabular" /> 50 <output name="tabular_file" file="four_human_proteins.effectiveT3.tabular" ftype="tabular" lines_diff="2"/>
51 </test> 51 </test>
52 <test> 52 <test>
53 <param name="fasta_file" value="empty.fasta" ftype="fasta" /> 53 <param name="fasta_file" value="empty.fasta" ftype="fasta" />
54 <param name="module" value="plant" /> 54 <param name="module" value="plant" />
55 <param name="type" value="sensistive" /> 55 <param name="type" value="sensitive" />
56 <output name="tabular_file" file="empty_effectiveT3.tabular" ftype="tabular" /> 56 <output name="tabular_file" file="empty_effectiveT3.tabular" ftype="tabular" />
57 </test> 57 </test>
58 </tests> 58 </tests>
59 <help> 59 <help>
60 60
97 See also http://effectors.org/ 97 See also http://effectors.org/
98 98
99 This wrapper is available to install into other Galaxy Instances via the Galaxy 99 This wrapper is available to install into other Galaxy Instances via the Galaxy
100 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/effectivet3 100 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/effectivet3
101 </help> 101 </help>
102 <citations>
103 <citation type="doi">10.7717/peerj.167</citation>
104 <citation type="doi">10.1093/nar/gkq1154</citation>
105 <citation type="doi">10.1371/journal.ppat.1000376</citation>
106 </citations>
102 </tool> 107 </tool>