Mercurial > repos > peterjc > effectivet3
diff tools/effectiveT3/README.rst @ 6:0f6eb4a75000 draft
v0.0.15 internal changes; v0.0.14 fixed error handling
author | peterjc |
---|---|
date | Wed, 05 Aug 2015 11:04:42 -0400 |
parents | 1ea715da1879 |
children | 5f85301d50bf |
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--- a/tools/effectiveT3/README.rst Tue Nov 25 08:28:24 2014 -0500 +++ b/tools/effectiveT3/README.rst Wed Aug 05 11:04:42 2015 -0400 @@ -1,7 +1,7 @@ Galaxy wrapper for EffectiveT3 v1.0.1 ===================================== -This wrapper is copyright 2011-2013 by Peter Cock, The James Hutton Institute +This wrapper is copyright 2011-2015 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below. @@ -86,7 +86,9 @@ - Development moved to GitHub, https://github.com/peterjc/pico_galaxy v0.0.13 - Relax unit test to allow for small floating point score difference. - Tool definition now embeds citation information. - - Fixed error handling in ``effectiveT3.py``. +v0.0.14 - Fixed error handling in ``effectiveT3.py``. +v0.0.15 - Reorder XML elements (internal change only). + - Planemo for Tool Shed upload (``.shed.yml``, internal change only). ======= ====================================================================== @@ -99,24 +101,33 @@ Development has now moved to a dedicated GitHub repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/effectiveT3 -For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use -the following command from the Galaxy root folder:: +For pushing a release to the test or main "Galaxy Tool Shed", use the following +Planemo commands (which requires you have set your Tool Shed access details in +``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ tar -czf effectiveT3.tar.gz tools/effectiveT3/README.rst tools/effectiveT3/effectiveT3.xml tools/effectiveT3/effectiveT3.py tools/effectiveT3/tool_dependencies.xml tool-data/effectiveT3.loc.sample test-data/four_human_proteins.fasta test-data/four_human_proteins.effectiveT3.tabular test-data/empty.fasta test-data/empty_effectiveT3.tabular + $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/effectiveT3/ + ... +or:: -Check this worked:: + $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/effectiveT3/ + ... + +To just build and check the tar ball, use:: - $ tar -tzf effectiveT3.tar.gz - tools/effectiveT3/README.rst - tools/effectiveT3/effectiveT3.xml - tools/effectiveT3/effectiveT3.py - tools/effectiveT3/tool_dependencies.xml + $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/effectiveT3/ + ... + $ tar -tzf shed_upload.tar.gz tool-data/effectiveT3.loc.sample + test-data/empty.fasta + test-data/empty_effectiveT3.tabular test-data/four_human_proteins.fasta test-data/four_human_proteins.effectiveT3.tabular - test-data/empty.fasta - test-data/empty_effectiveT3.tabular + tool-data/effectiveT3.loc.sample + tools/effectiveT3/README.rst + tools/effectiveT3/effectiveT3.py + tools/effectiveT3/effectiveT3.xml + tools/effectiveT3/tool_dependencies.xml Licence (MIT)