Mercurial > repos > peterjc > effectivet3
diff tools/effectiveT3/README.rst @ 7:5f85301d50bf draft
v0.0.16, adding new model TTSS-STD-2.0.2.jar
author | peterjc |
---|---|
date | Mon, 21 Sep 2015 05:52:29 -0400 |
parents | 0f6eb4a75000 |
children | 60a9b3f760cc |
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--- a/tools/effectiveT3/README.rst Wed Aug 05 11:04:42 2015 -0400 +++ b/tools/effectiveT3/README.rst Mon Sep 21 05:52:29 2015 -0400 @@ -27,7 +27,8 @@ ====================== This should be straightforward, Galaxy should automatically download and install -the Jar files for effectiveT3 v1.0.1 and the three models (animal, plant and std). +the Jar files for effectiveT3 v1.0.1 and its associated models (animal, plant and +standard). Manual Installation @@ -73,7 +74,7 @@ Version Changes ------- ---------------------------------------------------------------------- v0.0.7 - Initial public release -v0.0.8 - Include effectiveT3.loc.sample in Tool Shed +v0.0.8 - Include ``effectiveT3.loc.sample`` in Tool Shed v0.0.9 - Check the return code for errors in the XML v0.0.10 - Added unit test v0.0.11 - Automated installation @@ -89,6 +90,10 @@ v0.0.14 - Fixed error handling in ``effectiveT3.py``. v0.0.15 - Reorder XML elements (internal change only). - Planemo for Tool Shed upload (``.shed.yml``, internal change only). +v0.0.16 - Updated URLs to download the tool and models. + - Includes new standard classification model v2.0.2 (Sep 2015) + as the default entry in ``tool-data/effectiveT3.loc`` + - Catch java exception, e.g. if Java too old for ``TTSS-STD-2.0.1.jar`` ======= ====================================================================== @@ -105,12 +110,12 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/effectiveT3/ + $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/effectiveT3/ ... or:: - $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/effectiveT3/ + $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/effectiveT3/ ... To just build and check the tar ball, use::