Mercurial > repos > peterjc > effectivet3

diff tools/effectiveT3/effectiveT3.xml @ 7:5f85301d50bf draft

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v0.0.16, adding new model TTSS-STD-2.0.2.jar
author peterjc
date Mon, 21 Sep 2015 05:52:29 -0400
parents 0f6eb4a75000
children 60a9b3f760cc
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line diff
--- a/tools/effectiveT3/effectiveT3.xml	Wed Aug 05 11:04:42 2015 -0400
+++ b/tools/effectiveT3/effectiveT3.xml	Mon Sep 21 05:52:29 2015 -0400
@@ -1,4 +1,4 @@
-<tool id="effectiveT3" name="Effective T3" version="0.0.15">
+<tool id="effectiveT3" name="Effective T3" version="0.0.16">
     <description>Find bacterial effectors in protein sequences</description>
     <requirements>
         <requirement type="package" version="1.0.1">effectiveT3</requirement>
@@ -50,6 +50,13 @@
             <output name="tabular_file" file="four_human_proteins.effectiveT3.tabular" ftype="tabular" lines_diff="2"/>
         </test>
         <test>
+            <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta" />
+            <param name="module" value="std_2_0_2" />
+            <param name="type" value="cutoff" />
+            <param name="cutoff" value="0.8" />
+            <output name="tabular_file" file="four_human_proteins.effectiveT3_std2.tabular" ftype="tabular" />
+        </test>
+        <test>
             <param name="fasta_file" value="empty.fasta" ftype="fasta" />
             <param name="module" value="plant" />
             <param name="type" value="sensitive" />