Mercurial > repos > peterjc > effectivet3

diff tools/effectiveT3/README.rst @ 10:a46d7861c32c draft

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"Update all the pico_galaxy tools on main Tool Shed"
author peterjc
date Fri, 16 Apr 2021 22:34:56 +0000
parents 512530020360
children ed8c1babc166
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--- a/tools/effectiveT3/README.rst	Tue May 16 09:17:17 2017 -0400
+++ b/tools/effectiveT3/README.rst	Fri Apr 16 22:34:56 2021 +0000
@@ -10,12 +10,12 @@
 Jehl, Arnold and Rattei.
 Effective - a database of predicted secreted bacterial proteins
 Nucleic Acids Research, 39(Database issue), D591-5, 2011.
-http://dx.doi.org/10.1093/nar/gkq1154
+https://doi.org/10.1093/nar/gkq1154
 
 Arnold, Brandmaier, Kleine, Tischler, Heinz, Behrens, Niinikoski, Mewes, Horn and Rattei.
 Sequence-based prediction of type III secreted proteins.
 PLoS Pathog. 5(4):e1000376, 2009.
-http://dx.doi.org/10.1371/journal.ppat.1000376
+https://doi.org/10.1371/journal.ppat.1000376
 
 http://effectors.org/
 
@@ -98,6 +98,9 @@
         - Minor internal changes to Python script for error reporting & style.
 v0.0.18 - Use ``<command detect_errors="aggressive">`` (internal change only).
         - Single quote command line arguments (internal change only).
+v0.0.19 - Python 3 compatible exception handling.
+v0.0.20 - Work with Effective T3 as installed by BioConda (which provides a
+          wrapper script which can be used to find the main JAR file folder).
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