--- a/tools/effectiveT3/effectiveT3.xml	Thu May 16 04:45:41 2013 -0400
+++ b/tools/effectiveT3/effectiveT3.xml	Wed Sep 18 06:11:36 2013 -0400
@@ -1,4 +1,4 @@
-<tool id="effectiveT3" name="Effective T3" version="0.0.11">
+<tool id="effectiveT3" name="Effective T3" version="0.0.12">
     <description>Find bacterial effectors in protein sequences</description>
     <requirements>
         <requirement type="package" version="1.0.1">effectiveT3</requirement>
@@ -40,7 +40,7 @@
         </conditional>
     </inputs>
     <outputs>
-        <data name="tabular_file" format="tabular" label="$module.value_label results" />
+        <data name="tabular_file" format="tabular" label="Effective T3 $module.value_label on ${on_string}" />
     </outputs>
     <tests>
         <test>
@@ -76,17 +76,25 @@
 
 **References**
 
-Jehl, Arnold and Rattei.
+If you use this Galaxy tool in work leading to a scientific publication please
+cite the following papers:
+
+Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013).
+Galaxy tools and workflows for sequence analysis with applications
+in molecular plant pathology. PeerJ 1:e167
+http://dx.doi.org/10.7717/peerj.167
+
+Jehl, Arnold and Rattei (2011).
 Effective - a database of predicted secreted bacterial proteins
-Nucleic Acids Research, 39(Database issue), D591-5, 2011.
+Nucleic Acids Research, 39(Database issue), D591-5.
 http://dx.doi.org/10.1093/nar/gkq1154
 
-Arnold, Brandmaier, Kleine, Tischler, Heinz, Behrens, Niinikoski, Mewes, Horn and Rattei.
+Arnold, Brandmaier, Kleine, Tischler, Heinz, Behrens, Niinikoski, Mewes, Horn and Rattei (2009).
 Sequence-based prediction of type III secreted proteins.
-PLoS Pathog. 5(4):e1000376, 2009.
+PLoS Pathog. 5(4):e1000376.
 http://dx.doi.org/10.1371/journal.ppat.1000376
 
-http://effectors.org/
+See also http://effectors.org/
 
 This wrapper is available to install into other Galaxy Instances via the Galaxy
 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/effectivet3