Mercurial > repos > peterjc > fasta_filter_by_id

comparison tools/fasta_tools/fasta_filter_by_id.py @ 2:5b552b3005f2

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Migrated tool version 0.0.4 from old tool shed archive to new tool shed repository
author peterjc
date Tue, 07 Jun 2011 17:23:07 -0400
parents 5cd569750e85
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1:5cd569750e85 2:5b552b3005f2
10 records. 10 records.
11 11
12 Note in the default NCBI BLAST+ tabular output, the query sequence ID is 12 Note in the default NCBI BLAST+ tabular output, the query sequence ID is
13 in column one, and the ID of the match from the database is in column two. 13 in column one, and the ID of the match from the database is in column two.
14 Here sensible values for the column numbers would therefore be "1" or "2". 14 Here sensible values for the column numbers would therefore be "1" or "2".
15
16 This script is copyright 2010 by Peter Cock, SCRI, UK. All rights reserved.
17 See accompanying text file for licence details (MIT/BSD style).
18
19 This is version 0.0.3 of the script.
15 """ 20 """
16 import sys 21 import sys
17 from galaxy_utils.sequence.fasta import fastaReader, fastaWriter 22 from galaxy_utils.sequence.fasta import fastaReader, fastaWriter
18 23
19 def stop_err( msg ): 24 def stop_err( msg ):