Mercurial > repos > peterjc > fasta_filter_by_id

comparison tools/fasta_tools/fasta_filter_by_id.txt @ 1:5cd569750e85

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Migrated tool version 0.0.3 from old tool shed archive to new tool shed repository
author peterjc
date Tue, 07 Jun 2011 17:22:48 -0400
parents 2e5f8ad1a096
children 5b552b3005f2
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0:2e5f8ad1a096 1:5cd569750e85
12 There are just two files to install: 12 There are just two files to install:
13 13
14 * fasta_filter_by_id.py (the Python script) 14 * fasta_filter_by_id.py (the Python script)
15 * fasta_filter_by_id.xml (the Galaxy tool definition) 15 * fasta_filter_by_id.xml (the Galaxy tool definition)
16 16
17 The suggested location is next to the similarly names fasta_filter_by_length.py 17 The suggested location is next to the similarly named fasta_filter_by_length.py
18 and fasta_filter_by_length.xml files which are included with Galaxy, i.e. 18 and fasta_filter_by_length.xml files which are included with Galaxy, i.e.
19 in the Galaxy folder tools/fasta_tools 19 in the Galaxy folder tools/fasta_tools
20 20
21 You will also need to modify the tools_conf.xml file to tell Galaxy to offer 21 You will also need to modify the tools_conf.xml file to tell Galaxy to offer
22 the tool. The suggested location is next to the fasta_filter_by_length.xml 22 the tool. The suggested location is next to the fasta_filter_by_length.xml
28 28
29 29
30 History 30 History
31 ======= 31 =======
32 32
33 v0.0.1 - Initial verion (not publicly released) 33 v0.0.1 - Initial version (not publicly released)
34 v0.0.2 - Allow both, just pos or just neg output files 34 v0.0.2 - Allow both, just pos or just neg output files
35 v0.0.3 - Include FASTA in tool name
35 36
36 Developers 37 Developers
37 ========== 38 ==========
38 39
39 These wrappers are currently being developed on the following hg branch: 40 This script and similar versions for FASTQ and SFF files are currently being
41 developed on the following hg branch:
40 http://bitbucket.org/peterjc/galaxy-central/src/fasta_filter 42 http://bitbucket.org/peterjc/galaxy-central/src/fasta_filter
41 43
42 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use 44 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use
43 the following command from the Galaxy root folder: 45 the following command from the Galaxy root folder:
44 46