Mercurial > repos > peterjc > fasta_filter_by_id
diff tools/fasta_tools/fasta_filter_by_id.xml @ 1:5cd569750e85
Migrated tool version 0.0.3 from old tool shed archive to new tool shed repository
author | peterjc |
---|---|
date | Tue, 07 Jun 2011 17:22:48 -0400 |
parents | 2e5f8ad1a096 |
children | 5b552b3005f2 |
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--- a/tools/fasta_tools/fasta_filter_by_id.xml Tue Jun 07 17:22:24 2011 -0400 +++ b/tools/fasta_tools/fasta_filter_by_id.xml Tue Jun 07 17:22:48 2011 -0400 @@ -1,4 +1,4 @@ -<tool id="fasta_filter_by_id" name="Filter sequences by ID" version="0.0.2"> +<tool id="fasta_filter_by_id" name="Filter FASTA by ID" version="0.0.3"> <description>from a tabular file</description> <command interpreter="python"> fasta_filter_by_id.py $input_tabular $columns $input_fasta @@ -73,5 +73,12 @@ Note that the order of sequences in the original FASTA file is preserved. Also, if any sequences share an identifier, duplicates are not removed. +**Example Usage** + +Given a FASTA file of proteins you might run a signal peptide search (e.g. +via the SignalP wrapper for Galaxy), then filtered these tabular results to +select just those with a signal peptide. You could then use this tool to get +a FASTA file of only the proteins with predicted signal peptides. + </help> </tool>