Mercurial > repos > peterjc > fastq_paired_unpaired

comparison tools/fastq_paired_unpaired/fastq_paired_unpaired.xml @ 9:422724644e24 draft

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"Update all the pico_galaxy tools on main Tool Shed"
author peterjc
date Fri, 16 Apr 2021 22:47:43 +0000
parents 8cbc866b72ce
children 4851620acfda
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8:8cbc866b72ce 9:422724644e24
15 '$output_paired' 15 '$output_paired'
16 #end if 16 #end if
17 $output_singles 17 $output_singles
18 </command> 18 </command>
19 <inputs> 19 <inputs>
20 <param name="input_fastq" type="data" format="foobar" label="FASTQ file to divide into paired and unpaired reads"/> 20 <param name="input_fastq" type="data" format="fastq" label="FASTQ file to divide into paired and unpaired reads"/>
21 <conditional name="output_choice_cond"> 21 <conditional name="output_choice_cond">
22 <param name="output_choice" type="select" label="How to output paired reads?"> 22 <param name="output_choice" type="select" label="How to output paired reads?">
23 <option value="separate">Separate (two FASTQ files, for the forward and reverse reads, in matching order).</option> 23 <option value="separate">Separate (two FASTQ files, for the forward and reverse reads, in matching order).</option>
24 <option value="interleaved">Interleaved (one FASTQ file, alternating forward read then partner reverse read).</option> 24 <option value="interleaved">Interleaved (one FASTQ file, alternating forward read then partner reverse read).</option>
25 </param> 25 </param>