Mercurial > repos > peterjc > fastq_paired_unpaired
comparison tools/fastq/fastq_paired_unpaired.py @ 3:528ba9c896e0 draft
Uploaded v0.0.8, MIT licence and reST for README, citation information, development moved to GitHub
author | peterjc |
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date | Wed, 18 Sep 2013 06:13:27 -0400 |
parents | 95a632a71951 |
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2:95a632a71951 | 3:528ba9c896e0 |
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7 suffices. See below or run the tool with no arguments for more details. | 7 suffices. See below or run the tool with no arguments for more details. |
8 | 8 |
9 Note that the FASTQ variant is unimportant (Sanger, Solexa, Illumina, or even | 9 Note that the FASTQ variant is unimportant (Sanger, Solexa, Illumina, or even |
10 Color Space should all work equally well). | 10 Color Space should all work equally well). |
11 | 11 |
12 This script is copyright 2010-2011 by Peter Cock, The James Hutton Institute | 12 This script is copyright 2010-2013 by Peter Cock, The James Hutton Institute |
13 (formerly SCRI), Scotland, UK. All rights reserved. | 13 (formerly SCRI), Scotland, UK. All rights reserved. |
14 | 14 |
15 See accompanying text file for licence details (MIT/BSD style). | 15 See accompanying text file for licence details (MIT license). |
16 """ | 16 """ |
17 import os | 17 import os |
18 import sys | 18 import sys |
19 import re | 19 import re |
20 from galaxy_utils.sequence.fastq import fastqReader, fastqWriter | 20 from galaxy_utils.sequence.fastq import fastqReader, fastqWriter |
21 | 21 |
22 if "-v" in sys.argv or "--version" in sys.argv: | 22 if "-v" in sys.argv or "--version" in sys.argv: |
23 print "Version 0.0.6" | 23 print "Version 0.0.8" |
24 sys.exit(0) | 24 sys.exit(0) |
25 | 25 |
26 def stop_err(msg, err=1): | 26 def stop_err(msg, err=1): |
27 sys.stderr.write(msg.rstrip() + "\n") | 27 sys.stderr.write(msg.rstrip() + "\n") |
28 sys.exit(err) | 28 sys.exit(err) |