Mercurial > repos > peterjc > fastq_paired_unpaired

comparison tools/fastq/fastq_paired_unpaired.xml @ 3:528ba9c896e0 draft

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Uploaded v0.0.8, MIT licence and reST for README, citation information, development moved to GitHub
author peterjc
date Wed, 18 Sep 2013 06:13:27 -0400
parents 95a632a71951
children
comparison
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2:95a632a71951 3:528ba9c896e0
1 <tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.0.6"> 1 <tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.0.7">
2 <description>using the read name suffices</description> 2 <description>using the read name suffices</description>
3 <version_command interpreter="python">fastq_paired_unpaired.py --version</version_command> 3 <version_command interpreter="python">fastq_paired_unpaired.py --version</version_command>
4 <command interpreter="python"> 4 <command interpreter="python">
5 fastq_paired_unpaired.py $input_fastq.extension $input_fastq 5 fastq_paired_unpaired.py $input_fastq.extension $input_fastq
6 #if $output_choice_cond.output_choice=="separate" 6 #if $output_choice_cond.output_choice=="separate"
95 both become: 95 both become:
96 96
97 * WTSI_1055_4p17.p1kapIBF paired with WTSI_1055_4p17.q1kapIBR 97 * WTSI_1055_4p17.p1kapIBF paired with WTSI_1055_4p17.q1kapIBR
98 * WTSI_1055_4p17.p1kpIBF paired with WTSI_1055_4p17.q1kpIBR 98 * WTSI_1055_4p17.p1kpIBF paired with WTSI_1055_4p17.q1kpIBR
99 99
100 **References**
101
102 If you use this Galaxy tool in work leading to a scientific publication please
103 cite the following paper:
104
105 Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013).
106 Galaxy tools and workflows for sequence analysis with applications
107 in molecular plant pathology. PeerJ 1:e167
108 http://dx.doi.org/10.7717/peerj.167
109
110 This tool is available to install into other Galaxy Instances via the Galaxy
111 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/fastq_paired_unpaired
100 </help> 112 </help>
101 </tool> 113 </tool>