diff tools/fastq_paired_unpaired/README.rst @ 6:f396701fbf32 draft

v0.1.3 Depends on Biopython 1.67 via Tool Shed package or bioconda.
author peterjc
date Wed, 10 May 2017 13:28:59 -0400
parents b38bbcbd458d
children 2709a0f065c9
line wrap: on
line diff
--- a/tools/fastq_paired_unpaired/README.rst	Wed Aug 05 11:17:49 2015 -0400
+++ b/tools/fastq_paired_unpaired/README.rst	Wed May 10 13:28:59 2017 -0400
@@ -1,7 +1,7 @@
 Galaxy tool to divide FASTQ files into paired and unpaired reads
 ================================================================
 
-This tool is copyright 2010-2015 by Peter Cock, The James Hutton Institute
+This tool is copyright 2010-2017 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 See the licence text below (MIT licence).
 
@@ -71,6 +71,9 @@
         - Use ``format_source=...`` tag.
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
 v0.1.2  - Belatedly declare Biopython dependency via Tool Shed.
+v0.1.3  - Minor internal changes to Python script for error reporting & style.
+        - Updated to point at Biopython 1.67 (latest version in Tool Shed).
+        - Explicit dependency on ``galaxy_sequence_utils``.
 ======= ======================================================================
 
 
@@ -88,17 +91,17 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/fastq_paired_unpaired/
+    $ planemo shed_update -t testtoolshed --check_diff tools/fastq_paired_unpaired/
     ...
 
 or::
 
-    $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/fastq_paired_unpaired/
+    $ planemo shed_update -t toolshed --check_diff tools/fastq_paired_unpaired/
     ...
 
 To just build and check the tar ball, use::
 
-    $ planemo shed_upload --tar_only  ~/repositories/pico_galaxy/tools/fastq_paired_unpaired/
+    $ planemo shed_upload --tar_only tools/fastq_paired_unpaired/
     ...
     $ tar -tzf shed_upload.tar.gz 
     test-data/sanger-pairs-forward.fastq