Mercurial > repos > peterjc > fastq_paired_unpaired
diff tools/fastq_paired_unpaired/README.rst @ 6:f396701fbf32 draft
v0.1.3 Depends on Biopython 1.67 via Tool Shed package or bioconda.
author | peterjc |
---|---|
date | Wed, 10 May 2017 13:28:59 -0400 |
parents | b38bbcbd458d |
children | 2709a0f065c9 |
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--- a/tools/fastq_paired_unpaired/README.rst Wed Aug 05 11:17:49 2015 -0400 +++ b/tools/fastq_paired_unpaired/README.rst Wed May 10 13:28:59 2017 -0400 @@ -1,7 +1,7 @@ Galaxy tool to divide FASTQ files into paired and unpaired reads ================================================================ -This tool is copyright 2010-2015 by Peter Cock, The James Hutton Institute +This tool is copyright 2010-2017 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below (MIT licence). @@ -71,6 +71,9 @@ - Use ``format_source=...`` tag. - Planemo for Tool Shed upload (``.shed.yml``, internal change only). v0.1.2 - Belatedly declare Biopython dependency via Tool Shed. +v0.1.3 - Minor internal changes to Python script for error reporting & style. + - Updated to point at Biopython 1.67 (latest version in Tool Shed). + - Explicit dependency on ``galaxy_sequence_utils``. ======= ====================================================================== @@ -88,17 +91,17 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/fastq_paired_unpaired/ + $ planemo shed_update -t testtoolshed --check_diff tools/fastq_paired_unpaired/ ... or:: - $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/fastq_paired_unpaired/ + $ planemo shed_update -t toolshed --check_diff tools/fastq_paired_unpaired/ ... To just build and check the tar ball, use:: - $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/fastq_paired_unpaired/ + $ planemo shed_upload --tar_only tools/fastq_paired_unpaired/ ... $ tar -tzf shed_upload.tar.gz test-data/sanger-pairs-forward.fastq