Mercurial > repos > peterjc > fastq_paired_unpaired

changeset 5:b38bbcbd458d draft

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v0.1.2 belatedly declare Biopython dependency
author peterjc
date Wed, 05 Aug 2015 11:17:49 -0400
parents 09f9f0e29e47
children f396701fbf32
files tools/fastq_paired_unpaired/README.rst tools/fastq_paired_unpaired/fastq_paired_unpaired.xml tools/fastq_paired_unpaired/tool_dependencies.xml
diffstat 3 files changed, 11 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tools/fastq_paired_unpaired/README.rst	Wed Aug 05 11:06:38 2015 -0400
+++ b/tools/fastq_paired_unpaired/README.rst	Wed Aug 05 11:17:49 2015 -0400
@@ -20,7 +20,8 @@
 ======================
 
 This should be straightforward, Galaxy should automatically download and install
-the tool from the Galaxy Tool Shed, and run the unit tests
+the tool from the Galaxy Tool Shed, and Biopython, and allow you to run the unit
+tests.
 
 
 Manual Installation
@@ -69,6 +70,7 @@
 v0.1.1  - Reorder XML elements (internal change only).
         - Use ``format_source=...`` tag.
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
+v0.1.2  - Belatedly declare Biopython dependency via Tool Shed.
 ======= ======================================================================
 
 
--- a/tools/fastq_paired_unpaired/fastq_paired_unpaired.xml	Wed Aug 05 11:06:38 2015 -0400
+++ b/tools/fastq_paired_unpaired/fastq_paired_unpaired.xml	Wed Aug 05 11:17:49 2015 -0400
@@ -1,7 +1,7 @@
-<tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.1.1">
+<tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.1.2">
     <description>using the read name suffices</description>
     <requirements>
-        <requirement type="package" version="1.64">biopython</requirement>
+        <requirement type="package" version="1.65">biopython</requirement>
         <requirement type="python-module">Bio</requirement>
     </requirements>
     <stdio>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/fastq_paired_unpaired/tool_dependencies.xml	Wed Aug 05 11:17:49 2015 -0400
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="biopython" version="1.65">
+        <repository changeset_revision="dc595937617c" name="package_biopython_1_65" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>