Mercurial > repos > peterjc > get_orfs_or_cdss
comparison tools/get_orfs_or_cdss/README.rst @ 10:01b0488d9cfb draft
v0.2.2 Internal changes to command line handling
author | peterjc |
---|---|
date | Tue, 16 May 2017 09:11:27 -0400 |
parents | a06ad07431ba |
children | d51db443aaa4 |
comparison
equal
deleted
inserted
replaced
9:a06ad07431ba | 10:01b0488d9cfb |
---|---|
43 <tool file="get_orfs_or_cdss/get_orfs_or_cdss.xml" /> | 43 <tool file="get_orfs_or_cdss/get_orfs_or_cdss.xml" /> |
44 | 44 |
45 You will also need to install Biopython 1.65 or later (slightly older versions | 45 You will also need to install Biopython 1.65 or later (slightly older versions |
46 should be fine, but will not have the latest NCBI genetic code tables). | 46 should be fine, but will not have the latest NCBI genetic code tables). |
47 | 47 |
48 If you wish to run the unit tests, also move/copy the ``test-data/`` files | 48 If you wish to run the unit tests, also move/copy the ``test-data/`` files |
49 under Galaxy's ``test-data/`` folder. Then:: | 49 under Galaxy's ``test-data/`` folder. Then:: |
50 | 50 |
51 ./run_tests.sh -id get_orfs_or_cdss | 51 ./run_tests.sh -id get_orfs_or_cdss |
52 | 52 |
53 That's it. | 53 That's it. |
77 - Added NCBI genetic code table 24, Pterobranchia Mitochondrial. | 77 - Added NCBI genetic code table 24, Pterobranchia Mitochondrial. |
78 v0.1.1 - Reorder XML elements (internal change only). | 78 v0.1.1 - Reorder XML elements (internal change only). |
79 v0.2.0 - Tool now also outputs GFF3 formatted calls (Eric Rasche). | 79 v0.2.0 - Tool now also outputs GFF3 formatted calls (Eric Rasche). |
80 v0.2.1 - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda. | 80 v0.2.1 - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda. |
81 - Added NCBI genetic code table 24, Candidate Division SR1 and | 81 - Added NCBI genetic code table 24, Candidate Division SR1 and |
82 Gracilibacteria. | 82 Gracilibacteria. |
83 v0.2.2 - Use ``<command detect_errors="aggressive">`` (internal change only). | |
84 - Single quote command line arguments (internal change only). | |
83 ======= ====================================================================== | 85 ======= ====================================================================== |
84 | 86 |
85 | 87 |
86 Developers | 88 Developers |
87 ========== | 89 ========== |