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comparison tools/get_orfs_or_cdss/get_orfs_or_cdss.xml @ 11:d51db443aaa4 draft

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v0.2.3 Python 3 compatible print function.
author peterjc
date Wed, 30 May 2018 08:33:20 -0400
parents 01b0488d9cfb
children 71905a6d52a7
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10:01b0488d9cfb 11:d51db443aaa4
1 <tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.2.2"> 1 <tool id="get_orfs_or_cdss" name="Get open reading frames (ORFs) or coding sequences (CDSs)" version="0.2.3">
2 <description>e.g. to get peptides from ESTs</description> 2 <description>e.g. to get peptides from ESTs</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.67">biopython</requirement> 4 <requirement type="package" version="1.67">biopython</requirement>
5 </requirements> 5 </requirements>
6 <version_command> 6 <version_command>
50 <option value="26">29. Mesodinium Nuclear</option> 50 <option value="26">29. Mesodinium Nuclear</option>
51 <option value="26">30. Peritrich Nuclear</option> 51 <option value="26">30. Peritrich Nuclear</option>
52 <option value="26">31. Blastocrithidia Nuclear</option> 52 <option value="26">31. Blastocrithidia Nuclear</option>
53 --> 53 -->
54 </param> 54 </param>
55 <param name="ftype" type="select" value="True" label="Look for ORFs or CDSs"> 55 <param name="ftype" type="select" value="true" label="Look for ORFs or CDSs">
56 <option value="ORF">Look for ORFs (check for stop codons only, ignore start codons)</option> 56 <option value="ORF">Look for ORFs (check for stop codons only, ignore start codons)</option>
57 <option value="CDS">Look for CDSs (with start and stop codons)</option> 57 <option value="CDS">Look for CDSs (with start and stop codons)</option>
58 </param> 58 </param>
59 <param name="ends" type="select" value="open" label="Sequence end treatment"> 59 <param name="ends" type="select" value="open" label="Sequence end treatment">
60 <option value="open">Open ended (will allow missing start/stop codons at the ends)</option> 60 <option value="open">Open ended (will allow missing start/stop codons at the ends)</option>