diff tools/get_orfs_or_cdss/README.rst @ 9:a06ad07431ba draft

v0.2.1 Adds table 24; Depends on Biopython 1.67 via Tool Shed package or bioconda.
author peterjc
date Wed, 10 May 2017 13:24:46 -0400
parents 09a8be9247ca
children 01b0488d9cfb
line wrap: on
line diff
--- a/tools/get_orfs_or_cdss/README.rst	Sat Jan 09 23:42:32 2016 -0500
+++ b/tools/get_orfs_or_cdss/README.rst	Wed May 10 13:24:46 2017 -0400
@@ -1,7 +1,7 @@
 Galaxy tool to find ORFs or simple CDSs
 =======================================
 
-This tool is copyright 2011-2015 by Peter Cock, The James Hutton Institute
+This tool is copyright 2011-2017 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 Additions copyright 2015-2016 by Eric Rasche.
 See the licence text below (MIT licence).
@@ -77,6 +77,9 @@
         - Added NCBI genetic code table 24, Pterobranchia Mitochondrial.
 v0.1.1  - Reorder XML elements (internal change only).
 v0.2.0  - Tool now also outputs GFF3 formatted calls (Eric Rasche).
+v0.2.1  - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda.
+        - Added NCBI genetic code table 24, Candidate Division SR1 and
+	  Gracilibacteria.
 ======= ======================================================================
 
 
@@ -93,17 +96,17 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/get_orfs_or_cdss/
+    $ planemo shed_update -t testtoolshed --check_diff tools/get_orfs_or_cdss/
     ...
 
 or::
 
-    $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/get_orfs_or_cdss/
+    $ planemo shed_update -t toolshed --check_diff tools/get_orfs_or_cdss/
     ...
 
 To just build and check the tar ball, use::
 
-    $ planemo shed_upload --tar_only  ~/repositories/pico_galaxy/tools/get_orfs_or_cdss/
+    $ planemo shed_upload --tar_only tools/get_orfs_or_cdss/
     ...
     $ tar -tzf shed_upload.tar.gz
     test-data/Ssuis.fasta