Mercurial > repos > peterjc > get_orfs_or_cdss

diff tools/get_orfs_or_cdss/get_orfs_or_cdss.py @ 9:a06ad07431ba draft

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v0.2.1 Adds table 24; Depends on Biopython 1.67 via Tool Shed package or bioconda.
author peterjc
date Wed, 10 May 2017 13:24:46 -0400
parents 09a8be9247ca
children d51db443aaa4
line wrap: on
line diff
--- a/tools/get_orfs_or_cdss/get_orfs_or_cdss.py	Sat Jan 09 23:42:32 2016 -0500
+++ b/tools/get_orfs_or_cdss/get_orfs_or_cdss.py	Wed May 10 13:24:46 2017 -0400
@@ -17,8 +17,10 @@
 
 See accompanying text file for licence details (MIT licence).
 """
+
+import re
 import sys
-import re
+
 from optparse import OptionParser
 
 usage = """Use as follows:
@@ -210,6 +212,7 @@
         raise StopIteration
     yield values[0]
 
+
 if options.mode == "all":
     get_peptides = get_all_peptides
 elif options.mode == "top":