Mercurial > repos > peterjc > get_orfs_or_cdss
changeset 6:64e67f172188 draft
Uploaded v0.0.6, corrected automated dependency definition
| author | peterjc |
|---|---|
| date | Thu, 21 Nov 2013 10:47:53 -0500 |
| parents | 5208c15805ec |
| children | 705a2e2df7fb |
| files | tools/get_orfs_or_cdss/README.rst tools/get_orfs_or_cdss/repository_dependencies.xml tools/get_orfs_or_cdss/tool_dependencies.xml |
| diffstat | 3 files changed, 9 insertions(+), 8 deletions(-) [+] |
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--- a/tools/get_orfs_or_cdss/README.rst Mon Oct 28 05:19:38 2013 -0400 +++ b/tools/get_orfs_or_cdss/README.rst Thu Nov 21 10:47:53 2013 -0500 @@ -67,6 +67,7 @@ - Adopt standard MIT License. - Updated citation information (Cock et al. 2013). - Renamed folder and adopted README.rst naming. +v0.0.6 - Corrected automated dependency defintion. ======= ====================================================================== @@ -82,7 +83,7 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder:: - $ tar -czf get_orfs_or_cdss.tar.gz tools/get_orfs_or_cdss/README.rst tools/get_orfs_or_cdss/get_orfs_or_cdss.* tools/get_orfs_or_cdss/repository_dependencies.xml test-data/get_orf_input*.fasta test-data/Ssuis.fasta + $ tar -czf get_orfs_or_cdss.tar.gz tools/get_orfs_or_cdss/README.rst tools/get_orfs_or_cdss/get_orfs_or_cdss.* tools/get_orfs_or_cdss/tool_dependencies.xml test-data/get_orf_input*.fasta test-data/Ssuis.fasta Check this worked:: @@ -90,7 +91,7 @@ tools/get_orfs_or_cdss/README.rst tools/get_orfs_or_cdss/get_orfs_or_cdss.py tools/get_orfs_or_cdss/get_orfs_or_cdss.xml - tools/get_orfs_or_cdss/repository_dependencies.xml + tools/get_orfs_or_cdss/tool_dependencies.xml test-data/get_orf_input.fasta test-data/get_orf_input.Suis_ORF.nuc.fasta test-data/get_orf_input.Suis_ORF.prot.fasta
--- a/tools/get_orfs_or_cdss/repository_dependencies.xml Mon Oct 28 05:19:38 2013 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<repositories description="This requires Biopython as a dependency."> -<!-- Leave out the tool shed and revision to get the current - tool shed and latest revision at the time of upload --> -<repository changeset_revision="3e82cbc44886" name="package_biopython_1_62" owner="biopython" toolshed="http://toolshed.g2.bx.psu.edu" /> -</repositories>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/get_orfs_or_cdss/tool_dependencies.xml Thu Nov 21 10:47:53 2013 -0500 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="biopython" version="1.62"> + <repository changeset_revision="3e82cbc44886" name="package_biopython_1_62" owner="biopython" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>