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v0.0.11 tweak for use with bioconda dependencies
author peterjc
date Thu, 10 Aug 2017 11:09:10 -0400
parents a4f602cc3aa9
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3:a4f602cc3aa9 4:1713289d9908
1 Galaxy wrapper for the MIRA assembly program (v4.0) 1 Galaxy wrapper for the MIRA assembly program (v4.0)
2 =================================================== 2 ===================================================
3 3
4 This tool is copyright 2011-2015 by Peter Cock, The James Hutton Institute 4 This tool is copyright 2011-2016 by Peter Cock, The James Hutton Institute
5 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. 5 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
6 See the licence text below (MIT licence). 6 See the licence text below (MIT licence).
7 7
8 This tool is a short Python script (to collect the MIRA output and move it 8 This tool is a short Python script (to collect the MIRA output and move it
9 to where Galaxy expects the files) and associated Galaxy wrapper XML file. 9 to where Galaxy expects the files) and associated Galaxy wrapper XML file.
104 - Use the ``format_source=...`` tag in the MIRA bait wrapper. 104 - Use the ``format_source=...`` tag in the MIRA bait wrapper.
105 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). 105 - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
106 - MIRA 4.0.2 dependency now declared via dedicated Tool Shed package. 106 - MIRA 4.0.2 dependency now declared via dedicated Tool Shed package.
107 v0.0.8 - Renamed folder now have a MIRA 4.9.x wrapper (internal change only). 107 v0.0.8 - Renamed folder now have a MIRA 4.9.x wrapper (internal change only).
108 v0.0.9 - Additional unit tests now covering ``miraconvert``. 108 v0.0.9 - Additional unit tests now covering ``miraconvert``.
109 - Was missing ``mirabait`` wrapper since move to using Planemo. 109 - Re-include missing ``mirabait`` wrapper (accidentally left out when
110 changed to using Planemo for uploading to the Tool Shed).
111 v0.0.10 - Python 3 compatible syntax (internal change only).
112 - Use ``<command detect_errors="aggressive">`` (internal change only).
113 - Single quote command line arguments (internal change only).
114 v0.0.11 - For compatibility with MIRA installed from the BioConda package,
115 if ``MIRA4$`` is not set, assume binaries are on the ``$PATH``.
110 ======= ====================================================================== 116 ======= ======================================================================
111 117
112 118
113 Developers 119 Developers
114 ========== 120 ==========