Mercurial > repos > peterjc > mira4_assembler
comparison tools/mira4/tool_dependencies.xml @ 0:6a88b42ce6b9 draft
Uploaded v0.0.4, previously only on the TestToolShed
| author | peterjc |
|---|---|
| date | Fri, 21 Nov 2014 06:42:56 -0500 |
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| -1:000000000000 | 0:6a88b42ce6b9 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="samtools" version="0.1.19"> | |
| 4 <repository changeset_revision="923adc89c666" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="MIRA" version="4.0"> | |
| 7 <install version="1.0"> | |
| 8 <actions_group> | |
| 9 <!-- Download the binaries for MIRA compatible with 64-bit OSX. --> | |
| 10 <actions architecture="x86_64" os="darwin"> | |
| 11 <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_4.0.2_darwin13.1.0_x86_64_static.tar.bz2</action> | |
| 12 <action type="move_directory_files"> | |
| 13 <source_directory>bin</source_directory> | |
| 14 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 15 </action> | |
| 16 </actions> | |
| 17 <!-- Download the binaries for MIRA compatible with 64-bit Linux. --> | |
| 18 <actions architecture="x86_64" os="linux"> | |
| 19 <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_4.0.2_linux-gnu_x86_64_static.tar.bz2</action> | |
| 20 <action type="move_directory_files"> | |
| 21 <source_directory>bin</source_directory> | |
| 22 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 23 </action> | |
| 24 </actions> | |
| 25 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> | |
| 26 <actions> | |
| 27 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> | |
| 28 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> | |
| 29 <action type="shell_command">uname</action> | |
| 30 <action type="shell_command">arch</action> | |
| 31 <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action> | |
| 32 <action type="shell_command">echo "via https://github.com/peterjc/pico_galaxyt/issues - thank you!"</action> | |
| 33 <action type="shell_command">false</action> | |
| 34 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
| 35 </actions> | |
| 36 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
| 37 <action type="set_environment"> | |
| 38 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> | |
| 39 </action> | |
| 40 <action type="set_environment"> | |
| 41 <environment_variable action="set_to" name="MIRA4">$INSTALL_DIR</environment_variable> | |
| 42 </action> | |
| 43 </actions_group> | |
| 44 </install> | |
| 45 <readme> | |
| 46 Downloads MIRA v4.0.2 from Sourceforge, requesting Bastien's precompiled binaries | |
| 47 for 64 bit (x86_64) Linux or Mac OS X. Other platforms where compilation from | |
| 48 source would be required (e.g. 32 bit Linux) are not supported by this automated | |
| 49 installation script. | |
| 50 | |
| 51 http://chevreux.org/projects_mira.html | |
| 52 http://sourceforge.net/projects/mira-assembler/ | |
| 53 </readme> | |
| 54 </package> | |
| 55 </tool_dependency> |