Mercurial > repos > peterjc > mira4_assembler

comparison tools/mira4_0/README.rst @ 3:a4f602cc3aa9 draft

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v0.0.9, was missing mirabait. Adds tests for miraconvert
author peterjc
date Fri, 02 Oct 2015 06:12:23 -0400
parents 4eb32a3d67d1
children 1713289d9908
comparison
equal deleted inserted replaced
2:4eb32a3d67d1 3:a4f602cc3aa9
103 - Reorder XML elements (internal change only). 103 - Reorder XML elements (internal change only).
104 - Use the ``format_source=...`` tag in the MIRA bait wrapper. 104 - Use the ``format_source=...`` tag in the MIRA bait wrapper.
105 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). 105 - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
106 - MIRA 4.0.2 dependency now declared via dedicated Tool Shed package. 106 - MIRA 4.0.2 dependency now declared via dedicated Tool Shed package.
107 v0.0.8 - Renamed folder now have a MIRA 4.9.x wrapper (internal change only). 107 v0.0.8 - Renamed folder now have a MIRA 4.9.x wrapper (internal change only).
108 v0.0.9 - Additional unit tests now covering ``miraconvert``.
109 - Was missing ``mirabait`` wrapper since move to using Planemo.
108 ======= ====================================================================== 110 ======= ======================================================================
109 111
110 112
111 Developers 113 Developers
112 ========== 114 ==========
113 115
114 Development is on a dedicated GitHub repository: 116 Development is on a dedicated GitHub repository:
115 https://github.com/peterjc/pico_galaxy/tree/master/tools/mira_4_0 117 https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0
116 118
117 For pushing a release to the test or main "Galaxy Tool Shed", use the following 119 For pushing a release to the test or main "Galaxy Tool Shed", use the following
118 Planemo commands (which requires you have set your Tool Shed access details in 120 Planemo commands (which requires you have set your Tool Shed access details in
119 ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: 121 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
120 122
121 $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/mira4_0/ 123 $ planemo shed_update -t testtoolshed --check_diff tools/mira4_0/
122 ... 124 ...
123 125
124 or:: 126 or::
125 127
126 $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/mira4_0/ 128 $ planemo shed_update -t toolshed --check_diff tools/mira4_0/
127 ... 129 ...
128 130
129 To just build and check the tar ball, use:: 131 To just build and check the tar ball, use::
130 132
131 $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/mira4_0/ 133 $ planemo shed_upload --tar_only tools/mira4_0/
132 ... 134 ...
133 $ tar -tzf shed_upload.tar.gz 135 $ tar -tzf shed_upload.tar.gz
134 test-data/U13small_m.fastq 136 test-data/U13small_m.fastq
135 ... 137 ...
136 138