Mercurial > repos > peterjc > mira_assembler

comparison tools/sr_assembly/mira.xml @ 3:298f5c1d9521

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Uploaded v0.0.2 of the wrapper, which improves capture of the stdout/stderr log file from MIRA.
author peterjc
date Tue, 21 Jun 2011 09:50:32 -0400
parents 03b240624b5a
children 117cce3296af
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2:73263d5c2c9f 3:298f5c1d9521
1 <tool id="mira_assembler" name="Assemble with MIRA" version="0.0.1"> 1 <tool id="mira_assembler" name="Assemble with MIRA" version="0.0.2">
2 <description>Takes Sanger, Roche, and Illumina data</description> 2 <description>Takes Sanger, Roche, and Illumina data</description>
3 <command interpreter="python">mira.py mira $out_fasta $out_qual $out_tcs $out_ace $out_caf $out_wig $out_log 3 <command interpreter="python">mira.py mira $out_fasta $out_qual $out_tcs $out_ace $out_caf $out_wig $out_log
4 ##Give the wrapper script list of output filenames, then the mira command... 4 ##Give the wrapper script list of output filenames, then the mira command...
5 mira --job=$job_method,$job_type,$job_quality 5 mira --job=$job_method,$job_type,$job_quality
6 6