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comparison tools/sr_assembly/mira.xml @ 6:3e7eca1f5d04 draft

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MIRA wrapper v0.0.5 with <version_command> support and check for MIRA V3.4
author peterjc
date Fri, 01 Feb 2013 10:34:21 -0500
parents 216bf640baaf
children 4d3f94dfb857
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5:216bf640baaf 6:3e7eca1f5d04
1 <tool id="mira_assembler" name="Assemble with MIRA" version="0.0.4"> 1 <tool id="mira_assembler" name="Assemble with MIRA" version="0.0.5">
2 <description>Takes Sanger, Roche, Illumina, and Ion Torrent data</description> 2 <description>Takes Sanger, Roche, Illumina, and Ion Torrent data</description>
3 <version_command interpreter="python">mira.py -v</version_command>
3 <command interpreter="python">mira.py mira $out_fasta $out_qual $out_ace $out_caf $out_wig $out_log 4 <command interpreter="python">mira.py mira $out_fasta $out_qual $out_ace $out_caf $out_wig $out_log
4 ##Give the wrapper script list of output filenames, then the mira command... 5 ##Give the wrapper script list of output filenames, then the mira command...
5 mira --job=$job_method,$job_type,$job_quality 6 mira --job=$job_method,$job_type,$job_quality
6 7
7 ##Input files 8 ##Input files