Mercurial > repos > peterjc > mira_assembler

diff tools/sr_assembly/mira.xml @ 5:216bf640baaf draft

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Uploaded v0.0.4 which fixes a problem in v0.0.3 with the backbone arguments.
author peterjc
date Wed, 09 May 2012 12:40:06 -0400
parents 117cce3296af
children 3e7eca1f5d04
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--- a/tools/sr_assembly/mira.xml	Wed Dec 21 11:33:19 2011 -0500
+++ b/tools/sr_assembly/mira.xml	Wed May 09 12:40:06 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="mira_assembler" name="Assemble with MIRA" version="0.0.3">
+<tool id="mira_assembler" name="Assemble with MIRA" version="0.0.4">
     <description>Takes Sanger, Roche, Illumina, and Ion Torrent data</description>
 	<command interpreter="python">mira.py mira $out_fasta $out_qual $out_ace $out_caf $out_wig $out_log
 ##Give the wrapper script list of output filenames, then the mira command...
@@ -7,7 +7,7 @@
 ##Input files
 #if $condBackbone.use == "true":
     ## Can this be linked to job_method as well? If mapping we need the backbone...
-    -SB:lb=1:bft=1 -FN:bbin=${condBackbone.filename}
+    -SB:lb=1:bft=fasta -FN:bbin=${condBackbone.filename}
 #end if
 #if $condSanger.use == "true":
     SANGER_SETTINGS