# HG changeset patch # User peterjc # Date 1485958588 18000 # Node ID e8f15b0136cde8cb1522cb9f75d936d6d81d68e6 # Parent 1458e60f3fd074331e3b87d62130e44d07014e3c v0.0.11 dependency packaging update diff -r 1458e60f3fd0 -r e8f15b0136cd tools/nlstradamus/README.rst --- a/tools/nlstradamus/README.rst Wed Aug 05 12:23:05 2015 -0400 +++ b/tools/nlstradamus/README.rst Wed Feb 01 09:16:28 2017 -0500 @@ -1,7 +1,7 @@ Galaxy wrapper for NLStradamus v1.7 or v1.8 (C++ version) ========================================================= -This wrapper is copyright 2011-2015 by Peter Cock, The James Hutton Institute +This wrapper is copyright 2011-2017 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below (MIT licence). @@ -79,6 +79,7 @@ v0.0.9 - Tool definition now embeds citation information. v0.0.10 - Reorder XML elements (internal change only). - Planemo for Tool Shed upload (``.shed.yml``, internal change only). +v0.0.11 - Update tool dependency definition to use cached URL ======= ====================================================================== @@ -96,12 +97,12 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ + $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ ... or:: - $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ + $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ ... To just build and check the tar ball, use:: diff -r 1458e60f3fd0 -r e8f15b0136cd tools/nlstradamus/tool_dependencies.xml --- a/tools/nlstradamus/tool_dependencies.xml Wed Aug 05 12:23:05 2015 -0400 +++ b/tools/nlstradamus/tool_dependencies.xml Wed Feb 01 09:16:28 2017 -0500 @@ -3,7 +3,8 @@ - http://www.moseslab.csb.utoronto.ca/NLStradamus/NLStradamus/NLStradamus.1.8.tar.gz + + https://depot.galaxyproject.org/software/NLStradamus/NLStradamus_1.8_src_all.tar.gz g++ NLStradamus.cpp -o NLStradamus -O3 NLStradamus$INSTALL_DIR/