changeset 5:e8f15b0136cd draft default tip

v0.0.11 dependency packaging update
author peterjc
date Wed, 01 Feb 2017 09:16:28 -0500
parents 1458e60f3fd0
children
files tools/nlstradamus/README.rst tools/nlstradamus/tool_dependencies.xml
diffstat 2 files changed, 6 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tools/nlstradamus/README.rst	Wed Aug 05 12:23:05 2015 -0400
+++ b/tools/nlstradamus/README.rst	Wed Feb 01 09:16:28 2017 -0500
@@ -1,7 +1,7 @@
 Galaxy wrapper for NLStradamus v1.7 or v1.8 (C++ version)
 =========================================================
 
-This wrapper is copyright 2011-2015 by Peter Cock, The James Hutton Institute
+This wrapper is copyright 2011-2017 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 See the licence text below (MIT licence).
 
@@ -79,6 +79,7 @@
 v0.0.9  - Tool definition now embeds citation information.
 v0.0.10 - Reorder XML elements (internal change only).
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
+v0.0.11 - Update tool dependency definition to use cached URL
 ======= ======================================================================
 
 
@@ -96,12 +97,12 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/
+    $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/
     ...
 
 or::
 
-    $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/
+    $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/
     ...
 
 To just build and check the tar ball, use::
--- a/tools/nlstradamus/tool_dependencies.xml	Wed Aug 05 12:23:05 2015 -0400
+++ b/tools/nlstradamus/tool_dependencies.xml	Wed Feb 01 09:16:28 2017 -0500
@@ -3,7 +3,8 @@
     <package name="NLStradamus" version="1.8">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://www.moseslab.csb.utoronto.ca/NLStradamus/NLStradamus/NLStradamus.1.8.tar.gz</action>
+                <!-- Original URL http://www.moseslab.csb.utoronto.ca/NLStradamus/NLStradamus/NLStradamus.1.8.tar.gz -->
+                <action type="download_by_url" sha256sum="73ef3a77c6c1132f213d44bc2a48a8182e652b01b8cd83d06b30832a682ec0d0" target_filename="NLStradamus.1.8.tar.gz">https://depot.galaxyproject.org/software/NLStradamus/NLStradamus_1.8_src_all.tar.gz</action>
                 <!-- Although v1.7 used a subfolder in the tar-ball, v1.8 did not -->
                 <action type="shell_command">g++ NLStradamus.cpp -o NLStradamus -O3</action>
                 <action type="move_file"><source>NLStradamus</source><destination>$INSTALL_DIR/</destination></action>