Mercurial > repos > peterjc > package_mira_4_0_2
comparison tool_dependencies.xml @ 3:49974733ab62 draft default tip
Fix accidental removal of XML file
| author | peterjc |
|---|---|
| date | Thu, 02 Feb 2017 11:30:37 -0500 |
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| children |
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| 2:a1f4ed4cb301 | 3:49974733ab62 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="MIRA" version="4.0.2"> | |
| 4 <install version="1.0"> | |
| 5 <actions_group> | |
| 6 <!-- Download the binaries for MIRA compatible with 64-bit OSX. --> | |
| 7 <actions architecture="x86_64" os="darwin"> | |
| 8 <action type="download_by_url" sha256sum="3cdfba4be7bde1a97b15259b9fd3216c4369d906ea20f5f360f30dc0d83e7b8e">https://depot.galaxyproject.org/software/mira/mira_4.0.2_darwin_x64.tar.bz2</action> | |
| 9 <action type="move_directory_files"> | |
| 10 <source_directory>bin</source_directory> | |
| 11 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 12 </action> | |
| 13 </actions> | |
| 14 <!-- Download the binaries for MIRA compatible with 64-bit Linux. --> | |
| 15 <actions architecture="x86_64" os="linux"> | |
| 16 <action type="download_by_url" sha256sum="d3c74a6b402192e01d10adb8dbdc3450d4033fa0e7662ce5ce5de4f8c1967813">https://depot.galaxyproject.org/software/mira/mira_4.0.2_linux_x64.tar.bz2</action> | |
| 17 <action type="move_directory_files"> | |
| 18 <source_directory>bin</source_directory> | |
| 19 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 20 </action> | |
| 21 </actions> | |
| 22 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> | |
| 23 <actions> | |
| 24 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> | |
| 25 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> | |
| 26 <action type="shell_command">uname</action> | |
| 27 <action type="shell_command">arch</action> | |
| 28 <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action> | |
| 29 <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action> | |
| 30 <action type="shell_command">false</action> | |
| 31 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
| 32 </actions> | |
| 33 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
| 34 <action type="set_environment"> | |
| 35 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> | |
| 36 </action> | |
| 37 <action type="set_environment"> | |
| 38 <environment_variable action="set_to" name="MIRA4">$INSTALL_DIR</environment_variable> | |
| 39 </action> | |
| 40 </actions_group> | |
| 41 </install> | |
| 42 <readme> | |
| 43 Downloads MIRA v4.0.2 from Sourceforge, requesting Bastien's precompiled binaries | |
| 44 for 64 bit (x86_64) Linux or Mac OS X. Other platforms where compilation from | |
| 45 source would be required (e.g. 32 bit Linux) are not supported by this automated | |
| 46 installation script. | |
| 47 | |
| 48 http://chevreux.org/projects_mira.html | |
| 49 http://sourceforge.net/projects/mira-assembler/ | |
| 50 | |
| 51 The environment variable ``$MIRA4`` will point to the folder containing the binaries, | |
| 52 which is also pre-pended to the``$PATH`` variable. | |
| 53 </readme> | |
| 54 </package> | |
| 55 </tool_dependency> |