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author peterjc
date Tue, 07 May 2013 13:53:56 -0400
parents 0e7c07ff11f9
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1:d4e4464a8f88 2:fe5babf911e3
1 This Tool Shed Repository contains a workflow for comparing three RXLR prediction methods with a Venn Diagram, and creates a FASTA file of any proteins passing all three methods. 1 This Tool Shed Repository contains a workflow for comparing three RXLR
2 prediction methods with a Venn Diagram, and creates a FASTA file of any
3 proteins passing all three methods.
2 4
3 5
4 References 6 References
5 ========== 7 ==========
6 8
7 Stephen C. Whisson, Petra C. Boevink, Lucy Moleleki, Anna O. Avrova, Juan G. Morales, Eleanor M. Gilroy, Miles R. Armstrong, Severine Grouffaud, Pieter van West, Sean Chapman, Ingo Hein, Ian K. Toth, Leighton Pritchard and Paul R. J. Birch A translocation signal for delivery of oomycete effector proteins into host plant cells. Nature 450:115-118, 2007. 9 Stephen C. Whisson, Petra C. Boevink, Lucy Moleleki, Anna O. Avrova,
10 Juan G. Morales, Eleanor M. Gilroy, Miles R. Armstrong, Severine Grouffaud,
11 Pieter van West, Sean Chapman, Ingo Hein, Ian K. Toth, Leighton Pritchard
12 and Paul R. J. Birch A translocation signal for delivery of oomycete
13 effector proteins into host plant cells. Nature 450:115-118, 2007.
8 http://dx.doi.org/10.1038/nature06203 14 http://dx.doi.org/10.1038/nature06203
9 15
10 Joe Win, William Morgan, Jorunn Bos, Ksenia V. Krasileva, Liliana M. Cano, Angela Chaparro-Garcia, Randa Ammar, Brian J. Staskawicz and Sophien Kamoun. Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes. The Plant Cell 19:2349-2369, 2007. 16 Joe Win, William Morgan, Jorunn Bos, Ksenia V. Krasileva, Liliana M. Cano,
17 Angela Chaparro-Garcia, Randa Ammar, Brian J. Staskawicz and Sophien Kamoun.
18 Adaptive evolution has targeted the C-terminal domain of the RXLR effectors
19 of plant pathogenic oomycetes. The Plant Cell 19:2349-2369, 2007.
11 http://dx.doi.org/10.1105/tpc.107.051037 20 http://dx.doi.org/10.1105/tpc.107.051037
12 21
13 Souvik Bhattacharjee, N. Luisa Hiller, Konstantinos Liolios, Joe Win, Thirumala-Devi Kanneganti, Carolyn Young, Sophien Kamoun and Kasturi Haldar. The malarial host-targeting signal is conserved in the Irish potato famine pathogen. PLoS Pathogens, 2(5):e50, 2006. 22 Souvik Bhattacharjee, N. Luisa Hiller, Konstantinos Liolios, Joe Win,
23 Thirumala-Devi Kanneganti, Carolyn Young, Sophien Kamoun and Kasturi Haldar.
24 The malarial host-targeting signal is conserved in the Irish potato famine
25 pathogen. PLoS Pathogens, 2(5):e50, 2006.
14 http://dx.doi.org/10.1371/journal.ppat.0020050 26 http://dx.doi.org/10.1371/journal.ppat.0020050
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17 Availability 29 Availability
18 ============ 30 ============