Mercurial > repos > peterjc > rxlr_venn_workflow
diff rxlr_venn_workflow.ga @ 0:0e7c07ff11f9 draft
Uploaded v0.0.1, includes README file and dependencies.
author | peterjc |
---|---|
date | Mon, 06 May 2013 14:02:20 -0400 |
parents | |
children | 3c280e01b920 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rxlr_venn_workflow.ga Mon May 06 14:02:20 2013 -0400 @@ -0,0 +1,471 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "", + "format-version": "0.1", + "name": "3 RXLR methods, Venn Diagram, overlap FASTA", + "steps": { + "0": { + "annotation": "", + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "Input Dataset" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 200, + "top": 363 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"Input Dataset\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "1": { + "annotation": "", + "id": 1, + "input_connections": { + "fasta_file": { + "id": 0, + "output_name": "output" + } + }, + "inputs": [], + "name": "RXLR Motifs", + "outputs": [ + { + "name": "tabular_file", + "type": "tabular" + } + ], + "position": { + "left": 420, + "top": 363 + }, + "post_job_actions": { + "HideDatasetActiontabular_file": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "tabular_file" + } + }, + "tool_errors": null, + "tool_id": "rxlr_motifs", + "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Whisson2007\\\"\"}", + "tool_version": "0.0.6", + "type": "tool", + "user_outputs": [] + }, + "2": { + "annotation": "", + "id": 2, + "input_connections": { + "fasta_file": { + "id": 0, + "output_name": "output" + } + }, + "inputs": [], + "name": "RXLR Motifs", + "outputs": [ + { + "name": "tabular_file", + "type": "tabular" + } + ], + "position": { + "left": 420, + "top": 483 + }, + "post_job_actions": { + "HideDatasetActiontabular_file": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "tabular_file" + } + }, + "tool_errors": null, + "tool_id": "rxlr_motifs", + "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Win2007\\\"\"}", + "tool_version": "0.0.6", + "type": "tool", + "user_outputs": [] + }, + "3": { + "annotation": "", + "id": 3, + "input_connections": { + "fasta_file": { + "id": 0, + "output_name": "output" + } + }, + "inputs": [], + "name": "RXLR Motifs", + "outputs": [ + { + "name": "tabular_file", + "type": "tabular" + } + ], + "position": { + "left": 420, + "top": 603 + }, + "post_job_actions": { + "HideDatasetActiontabular_file": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "tabular_file" + } + }, + "tool_errors": null, + "tool_id": "rxlr_motifs", + "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Bhattacharjee2006\\\"\"}", + "tool_version": "0.0.6", + "type": "tool", + "user_outputs": [] + }, + "4": { + "annotation": "", + "id": 4, + "input_connections": { + "input": { + "id": 1, + "output_name": "tabular_file" + } + }, + "inputs": [], + "name": "Filter", + "outputs": [ + { + "name": "out_file1", + "type": "input" + } + ], + "position": { + "left": 640, + "top": 363 + }, + "post_job_actions": { + "HideDatasetActionout_file1": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "out_file1" + }, + "RenameDatasetActionout_file1": { + "action_arguments": { + "newname": "Positive Whisson et al. 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