diff tools/samtools_idxstats/README.rst @ 2:71afa65f444a draft default tip

v0.0.5 Internal changes to command line handling
author peterjc
date Tue, 16 May 2017 09:24:18 -0400
parents 8945bad80f4a
children
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--- a/tools/samtools_idxstats/README.rst	Wed May 13 10:35:50 2015 -0400
+++ b/tools/samtools_idxstats/README.rst	Tue May 16 09:24:18 2017 -0400
@@ -54,6 +54,8 @@
 v0.0.3  - Embed samtools citation in tool XML.
 v0.0.4  - Reorder XML elements (internal change only).
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
+v0.0.5  - Use ``<command detect_errors="aggressive">`` (internal change only).
+        - Single quote command line arguments (internal change only).
 ======= ======================================================================
 
 
@@ -68,17 +70,17 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_upload --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/samtools_idxstats/
+    $ planemo shed_update -t testtoolshed --check_diff tools/samtools_idxstats/
     ...
 
 or::
 
-    $ planemo shed_upload --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/samtools_idxstats/
+    $ planemo shed_update -t toolshed --check_diff tools/samtools_idxstats/
     ...
 
 To just build and check the tar ball, use::
 
-    $ planemo shed_upload --tar_only  ~/repositories/pico_galaxy/tools/samtools_idxstats/
+    $ planemo shed_upload --tar_only tools/samtools_idxstats/
     ...
     $ tar -tzf shed_upload.tar.gz 
     test-data/ex1.bam