Mercurial > repos > peterjc > samtools_idxstats
diff tools/samtools_idxstats/README.rst @ 2:71afa65f444a draft default tip
v0.0.5 Internal changes to command line handling
author | peterjc |
---|---|
date | Tue, 16 May 2017 09:24:18 -0400 |
parents | 8945bad80f4a |
children |
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--- a/tools/samtools_idxstats/README.rst Wed May 13 10:35:50 2015 -0400 +++ b/tools/samtools_idxstats/README.rst Tue May 16 09:24:18 2017 -0400 @@ -54,6 +54,8 @@ v0.0.3 - Embed samtools citation in tool XML. v0.0.4 - Reorder XML elements (internal change only). - Planemo for Tool Shed upload (``.shed.yml``, internal change only). +v0.0.5 - Use ``<command detect_errors="aggressive">`` (internal change only). + - Single quote command line arguments (internal change only). ======= ====================================================================== @@ -68,17 +70,17 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_upload --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/samtools_idxstats/ + $ planemo shed_update -t testtoolshed --check_diff tools/samtools_idxstats/ ... or:: - $ planemo shed_upload --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/samtools_idxstats/ + $ planemo shed_update -t toolshed --check_diff tools/samtools_idxstats/ ... To just build and check the tar ball, use:: - $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/samtools_idxstats/ + $ planemo shed_upload --tar_only tools/samtools_idxstats/ ... $ tar -tzf shed_upload.tar.gz test-data/ex1.bam