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comparison tools/seq_filter_by_mapping/README.rst @ 5:1d6c149ca211 draft

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Bump Biopython dependency
author peterjc
date Thu, 30 Nov 2023 09:50:23 +0000
parents f82868a026ea
children
comparison
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4:f82868a026ea 5:1d6c149ca211
1 Galaxy tool to filter FASTA, FASTQ or SFF sequences by SAM/BAM mapping 1 Galaxy tool to filter FASTA, FASTQ or SFF sequences by SAM/BAM mapping
2 ====================================================================== 2 ======================================================================
3 3
4 This tool is copyright 2014-2017 by Peter Cock, The James Hutton Institute 4 This tool is copyright 2014-2023 by Peter Cock, The James Hutton Institute
5 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. 5 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
6 See the licence text below. 6 See the licence text below.
7 7
8 This tool is a short Python script (using Biopython library functions) which 8 This tool is a short Python script (using Biopython library functions) which
9 divides a FASTA, FASTQ, or SFF file in two, those sequences which do or do 9 divides a FASTA, FASTQ, or SFF file in two, those sequences which do or do
70 - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda. 70 - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda.
71 - Use ``<command detect_errors="aggressive">`` (internal change only). 71 - Use ``<command detect_errors="aggressive">`` (internal change only).
72 - Single quote command line arguments (internal change only). 72 - Single quote command line arguments (internal change only).
73 v0.0.6 - Python 3 compatible print function. 73 v0.0.6 - Python 3 compatible print function.
74 v0.0.7 - Script works on Python 2 and 3 (fixed input file mode) 74 v0.0.7 - Script works on Python 2 and 3 (fixed input file mode)
75 v0.0.8 - Bumped Biopython dependency version for Python 3 fixes.
75 ======= ====================================================================== 76 ======= ======================================================================
76 77
77 78
78 Developers 79 Developers
79 ========== 80 ==========