Mercurial > repos > peterjc > seq_filter_by_mapping
comparison test-data/SRR639755_sample_by_coord.sam @ 0:1d773da0ccf0 draft
Uploaded v0.0.2, fixed some error messages
| author | peterjc |
|---|---|
| date | Tue, 27 Jan 2015 08:31:13 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:1d773da0ccf0 |
|---|---|
| 1 @HD VN:1.0 SO:coordinate | |
| 2 @SQ SN:gi|187250362|ref|NC_010642.1| LN:16990 | |
| 3 @PG ID:clc_mapper VN:4.10.86742 CL:clc_mapper -d -z xxx -p fb ss 1 1000 -q yyy -o temp_job.cas --cpus 8 | |
| 4 @RG ID:RG_0 DS:yyy PG:clc_mapper | |
| 5 SRR639755.6451003 99 gi|187250362|ref|NC_010642.1| 1352 255 7S94M = 1604 353 ATATCTGCAGTTAACATAAAAATATAGCACGAAAGTAACTTTAATATCTCCGACCACACGATAGCTAAGACCCAAACTGGGATTAGATACCCCGCTATGCT <?7A4ADDFHHDHIIBH<HGDHEIG>HBHGGEFH@?D<GDGGHDGGG>DDDFGFHGHGIGB;CEH>A>DEEC?B;;=@CC9;;?CCCCCCC@<9>5<<@A4 RG:Z:RG_0 MD:Z:8G8C22T2T42A7 NM:i:11 | |
| 6 SRR639755.6451003 147 gi|187250362|ref|NC_010642.1| 1604 255 101M = 1352 353 TTCAGCCTACATACCGCCATCTTCAGCAAACCCTAAAAAGGAAGAAAAGTAAGCACAAGTGCCTTAACACAAAAAAGTTAGGTCAAGGTGTAGCCCATGAG >?BA::3B:C?98B@@CC>CA>EEEFFFBCEE>FJJIHC@DDGIIIHF@HFHCFBHD@GGHBFD@HHBDGAFCCEC8HEIHDH>HEHBHHFGHDDD=F@@@ RG:Z:RG_0 MD:Z:9T50AT7T31 NM:i:4 | |
| 7 SRR639755.6035319 137 gi|187250362|ref|NC_010642.1| 9094 255 101M * 0 0 TACTTATGTCTCTCATTTTATTTATTGGGCCAACAAATCTGCTAGGTCTACTACCTCACTCATTTACTCCAACTACGCAATTATCAATAAAACTAGGCATA ?@@FD;:+AHB4<C9F4HEFH@EAA?EE++<<A@FHADDB<?:4D)0*0?D?BFFGIIIDBE:=BDE)=FHGED>;('(5,;;;6;6;>;>(5((5?C(,: RG:Z:RG_0 MD:Z:29T46C14C9 NM:i:3 | |
| 8 SRR639755.2301126 137 gi|187250362|ref|NC_010642.1| 9117 255 101M * 0 0 ATTGGGTCAACAAATCTGCTAGGTCTACTACCTCACTCATTTACTCCAACTACCCAATTATCAATAAACCTAGGCATAGCCATCCCCTTGTGAGCCGGCAC ?@BDB;=AAAAFFDHBGAAHI>;<AFCAF@?GEDEEFHAHFH@<F<D@GGEHIEF@HIE>GH=B@CCGAHC@@DEHHFEHDFFFFDDE>?CCDACCBDB@B RG:Z:RG_0 MD:Z:101 NM:i:0 | |
| 9 SRR639755.6955680 89 gi|187250362|ref|NC_010642.1| 9285 255 97M4S * 0 0 GTCCCCTTAATCCCTATGCTCGTAATTATCGAAACTATCAGCCTTTTTATCCAGCCCGTAGCCCTAGCCGTACGACTCACAGCTAATATTACTGCAGATAT 9<>8CAACC?CBC@DDD@?<8A@>(BBC?DDAB;?C@BFFEEAIIHD@EGF6GGGGAFD?B8GCEJJIIHEIIHEGIHHIJJIEGIGGDHFFC=2FFFBB? RG:Z:RG_0 MD:Z:97 NM:i:0 | |
| 10 SRR639755.7076397 89 gi|187250362|ref|NC_010642.1| 9285 255 97M4S * 0 0 GTCCCCTTAATCCCTATGCTCGTAATTATCGAAACTATCAGCCTTTTTATCCAGCCCGTAGCCCTAGCCGTACGACTCACAGCTAATATTACTGCAGATAT BBDBCDDCDDCDDCDCBDDD@CACC@DFBDDEB>DFFFFFHHHJJJIGGDJIIGJJIIHGIJJJIJIJIIHGIJIJIJJJJJJJJJJJHHHFC=2FFD?@= RG:Z:RG_0 MD:Z:97 NM:i:0 | |
| 11 SRR639755.2301126 69 * 0 255 * gi|187250362|ref|NC_010642.1| 9117 0 ATATCTGCAGTGAGCCTGACTTGGGGCTCGAACTCATGAACCATGAGATCATGACCTGAGCTGAAGTCGTACGGCTAGGGCTACGGGCTGGATAAAAAGGC +1=BDDDDHHHFBF?GDECFGHDEFH@?C:?F@;DH@4B?9)?<BF?=)8C@G=88CC@EHICHH>7=;?;?><A>=A;?(<?9'2-<>B91(>@@CC5?< RG:Z:RG_0 | |
| 12 SRR639755.6035319 69 * 0 255 * gi|187250362|ref|NC_010642.1| 9094 0 ATATCTGCAGTAATATTAGCTGTGAGTCGTACGGCTAGGGCCACGGGCTGGGTAGCAACGATGCTGGGGTGCAGAATTAGGCGGCTGGGCATTAAAGCGAC 1:;44222222<ABDGG@I?4CFD<ACBG?8ACF@0???B9)0)7A0<@8'().()).(,(.5,((-,',,(((,,(((++(0&&0&&(((+((((+()(& RG:Z:RG_0 | |
| 13 SRR639755.6955680 165 * 0 255 * gi|187250362|ref|NC_010642.1| 9285 0 CCGACTGAGCCACCCAGGCGCCCCTAAATTTGCTTTTAATTTTAATGGTGGTTATATTTATTGGGGCAACAAATCTGCTAGGTCTACTACCTCACTCATTT @@BFFADDF?FHHJAE:A@GEHHGHGGIGGE9DCHHHIJIIIG@GGBGHID';=7C==@:=.=CH64<?(;?B>35>@:@>9,::@>;5><A>:<:>9444 RG:Z:RG_0 | |
| 14 SRR639755.7076397 165 * 0 255 * gi|187250362|ref|NC_010642.1| 9285 0 TGACAGCACATTTATTTACAAACTGGTTTGCTGAATATTTTAATCCCACTGTTGAGGCCTACTACCTCACTCATTTACTCCAACTACCCAATTATCAATAA CC@FFFFFHFHHHJJJJJJIJJJJJIFHGIIIJIIGEGIJJJJIJIHIJHIJIIJJIIIJJJJJJJIJJJJIJJJJGHHGHGFFFFFEDCDDDDDD;>;AC RG:Z:RG_0 |