--- a/tools/seq_filter_by_mapping/README.rst	Wed May 13 11:08:58 2015 -0400
+++ b/tools/seq_filter_by_mapping/README.rst	Wed May 10 13:16:44 2017 -0400
@@ -1,7 +1,7 @@
 Galaxy tool to filter FASTA, FASTQ or SFF sequences by SAM/BAM mapping
 ======================================================================
 
-This tool is copyright 2014-2015 by Peter Cock, The James Hutton Institute
+This tool is copyright 2014-2017 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 See the licence text below.
 
@@ -66,6 +66,10 @@
 v0.0.4  - Use the ``format_source=...`` tag.
         - Reorder XML elements (internal change only).
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
+v0.0.5  - Python script cleanups (internal change only).
+        - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda.
+        - Use ``<command detect_errors="aggressive">`` (internal change only).
+        - Single quote command line arguments (internal change only).
 ======= ======================================================================
 
 
@@ -82,17 +86,17 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_upload --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/seq_filter_by_mapping/
+    $ planemo shed_update -t testtoolshed --check_diff tools/seq_filter_by_mapping/
     ...
 
 or::
 
-    $ planemo shed_upload --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/seq_filter_by_mapping/
+    $ planemo shed_update -t toolshed --check_diff tools/seq_filter_by_mapping/
     ...
 
 To just build and check the tar ball, use::
 
-    $ planemo shed_upload --tar_only  ~/repositories/pico_galaxy/tools/seq_filter_by_mapping/
+    $ planemo shed_upload --tar_only tools/seq_filter_by_mapping/
     ...
     $ tar -tzf shed_upload.tar.gz
     test-data/SRR639755_mito_pairs.fastq.gz