Mercurial > repos > peterjc > seq_primer_clip

comparison tools/seq_primer_clip/README.rst @ 3:708ce1e5ac94 draft

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Uploaded v0.0.11, corrected automated dependency definition
author peterjc
date Thu, 21 Nov 2013 10:47:23 -0500
parents ee5acea162a7
children 9b074c1db68e
comparison
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2:ee5acea162a7 3:708ce1e5ac94
59 - Use reStructuredText for this README file. 59 - Use reStructuredText for this README file.
60 - Adopted standard MIT licence. 60 - Adopted standard MIT licence.
61 - Automated installation of Biopython dependency. 61 - Automated installation of Biopython dependency.
62 - Development moved to GitHub, https://github.com/peterjc/pico_galaxy 62 - Development moved to GitHub, https://github.com/peterjc/pico_galaxy
63 - Renamed folder and adopted README.rst naming. 63 - Renamed folder and adopted README.rst naming.
64 v0.0.11 - Correct automated dependency definition.
64 ======= ====================================================================== 65 ======= ======================================================================
65 66
66 67
67 Developers 68 Developers
68 ========== 69 ==========
75 https://github.com/peterjc/pico_galaxy 76 https://github.com/peterjc/pico_galaxy
76 77
77 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use 78 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
78 the following command from the Galaxy root folder:: 79 the following command from the Galaxy root folder::
79 80
80 $ tar -czf seq_primer_clip.tar.gz tools/seq_primer_clip/README.rst tools/seq_primer_clip/seq_primer_clip.* tools/seq_primer_clip/repository_dependencies.xml test-data/dop_primers.fasta test-data/MID4_GLZRM4E04_rnd30* 81 $ tar -czf seq_primer_clip.tar.gz tools/seq_primer_clip/README.rst tools/seq_primer_clip/seq_primer_clip.* tools/seq_primer_clip/tool_dependencies.xml test-data/dop_primers.fasta test-data/MID4_GLZRM4E04_rnd30*
81 82
82 Check this worked:: 83 Check this worked::
83 84
84 $ tar -tzf seq_primer_clip.tar.gz 85 $ tar -tzf seq_primer_clip.tar.gz
85 tools/seq_primer_clip/README.rst 86 tools/seq_primer_clip/README.rst
86 tools/seq_primer_clip/seq_primer_clip.xml 87 tools/seq_primer_clip/seq_primer_clip.xml
87 tools/seq_primer_clip/seq_primer_clip.py 88 tools/seq_primer_clip/seq_primer_clip.py
88 tools/seq_primer_clip/repository_dependencies.xml 89 tools/seq_primer_clip/tool_dependencies.xml
89 test-data/dop_primers.fasta 90 test-data/dop_primers.fasta
90 test-data/MID4_GLZRM4E04_rnd30.fasta 91 test-data/MID4_GLZRM4E04_rnd30.fasta
91 test-data/MID4_GLZRM4E04_rnd30.fastqsanger 92 test-data/MID4_GLZRM4E04_rnd30.fastqsanger
92 test-data/MID4_GLZRM4E04_rnd30_fclip.fasta 93 test-data/MID4_GLZRM4E04_rnd30_fclip.fasta
93 test-data/MID4_GLZRM4E04_rnd30_fclip.fastqsanger 94 test-data/MID4_GLZRM4E04_rnd30_fclip.fastqsanger