Mercurial > repos > peterjc > seq_select_by_id

annotate test-data/k12_ten_proteins.fasta @ 4:6842c0c7bc70 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.0.7, depend on Biopython 1.62, tabs to spaces in XML
author peterjc
date Mon, 28 Oct 2013 05:21:45 -0400
parents 28d52478ace9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
1 >gi|16127995|ref|NP_414542.1| thr operon leader peptide [Escherichia coli str. K-12 substr. MG1655]
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
2 MKRISTTITTTITITTGNGAG
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
3 >gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I [Escherichia coli str. K-12 substr. MG1655]
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
4 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERI
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
5 FAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEA
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
6 RGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYS
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
7 AAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPC
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
8 LIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLIT
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
9 QSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
10 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSW
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
11 LKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAV
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
12 ADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELM
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
13 KFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIE
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
14 IEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFK
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
15 VKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
16 >gi|16127997|ref|NP_414544.1| homoserine kinase [Escherichia coli str. K-12 substr. MG1655]
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
17 MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEPRENIVYQCWE
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
18 RFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHY
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
19 DNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGF
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
20 IHACYSRQPELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPETAQRVA
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
21 DWLGKNYLQNQEGFVHICRLDTAGARVLEN
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
22 >gi|16127998|ref|NP_414545.1| threonine synthase [Escherichia coli str. K-12 substr. MG1655]
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
23 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILSAFIGDEIPQE
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
24 ILEERVRAAFAFPAPVANVESDVGCLELFHGPTLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAA
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
25 VAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNS
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
26 ANSINISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVP
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
27 RFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTS
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
28 EPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
29 RKLMMNHQ
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
30 >gi|16127999|ref|NP_414546.1| hypothetical protein b0005 [Escherichia coli str. K-12 substr. MG1655]
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
31 MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQHYEWRGNRWHL
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
32 HGPPPPPRHHKKAPHDHHGGHGPGKHHR
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
33 >gi|16128000|ref|NP_414547.1| peroxide resistance protein, lowers intracellular iron [Escherichia coli str. K-12 substr. MG1655]
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
34 MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGINAARFHDWQPD
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
35 FTPANARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARG
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
36 KDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKK
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
37 ARGLMSRFIIENRLTKPEQLTGFNSEGYFFDEDSSSNGELVFKRYEQR
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
38 >gi|16128001|ref|NP_414548.1| putative transporter [Escherichia coli str. K-12 substr. MG1655]
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
39 MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAA
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
40 RVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMR
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
41 WMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLVTGIILAVFTLLAITRGLHGVARLMQGFVPL
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
42 MAIIWVLTSLVICVMNIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPN
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
43 AAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAE
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
44 FVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
45 ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
46 >gi|16128002|ref|NP_414549.1| transaldolase B [Escherichia coli str. K-12 substr. MG1655]
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
47 MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSNDRAQQI
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
48 VDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGI
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
49 RAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIY
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
50 QYYKEHGYETVVMGASFRNIGEILELAGCDRLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESE
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
51 FLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
52 >gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin [Escherichia coli str. K-12 substr. MG1655]
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
53 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLV
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
54 LTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIK
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
55 ETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
56 >gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family [Escherichia coli str. K-12 substr. MG1655]
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
57 MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIFYGGIAQIFAGLLEYKKGNTFGLTAFT
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
58 SYGSFWLTLVAILLMPKLGLTDAPNAQFLGVYLGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAI
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
59 GNIAGNAAIIHFAGWIGLICGASAIYLAMGEVLNEQFGRTVLPIGESH
28d52478ace9 Uploaded v0.0.4 which adds a unit test.
peterjc
parents:
diff changeset
60