Mercurial > repos > peterjc > seq_select_by_id

comparison tools/filters/seq_select_by_id.txt @ 2:28d52478ace9 draft

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Uploaded v0.0.4 which adds a unit test.
author peterjc
date Mon, 15 Apr 2013 12:28:51 -0400
parents 50a8a6917a9c
children
comparison
equal deleted inserted replaced
1:50a8a6917a9c 2:28d52478ace9
33 33
34 History 34 History
35 ======= 35 =======
36 36
37 v0.0.1 - Initial version. 37 v0.0.1 - Initial version.
38 v0.0.3 - Ignore blank lines in input 38 v0.0.3 - Ignore blank lines in input.
39 v0.0.4 - Record script version when run from Galaxy.
40 - Basic unit test included.
41
39 42
40 Developers 43 Developers
41 ========== 44 ==========
42 45
43 This script and related tools are being developed on the following hg branch: 46 This script and related tools are being developed on the following hg branch:
44 http://bitbucket.org/peterjc/galaxy-central/src/tools 47 http://bitbucket.org/peterjc/galaxy-central/src/tools
45 48
46 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use 49 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
47 the following command from the Galaxy root folder: 50 the following command from the Galaxy root folder:
48 51
49 tar -czf seq_select_by_id.tar.gz tools/filters/seq_select_by_id.* 52 $ tar -czf seq_select_by_id.tar.gz tools/filters/seq_select_by_id.* test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular
50 53
51 Check this worked: 54 Check this worked:
52 55
53 $ tar -tzf seq_select_by_id.tar.gz 56 $ tar -tzf seq_select_by_id.tar.gz
54 filter/seq_select_by_id.py 57 filter/seq_select_by_id.py
55 filter/seq_select_by_id.txt 58 filter/seq_select_by_id.txt
56 filter/seq_select_by_id.xml 59 filter/seq_select_by_id.xml
60 test-data/k12_ten_proteins.fasta
61 test-data/k12_hypothetical.fasta
62 test-data/k12_hypothetical.tabular
57 63
58 64
59 Licence (MIT/BSD style) 65 Licence (MIT/BSD style)
60 ======================= 66 =======================
61 67