Mercurial > repos > peterjc > seq_select_by_id
comparison tools/filters/seq_select_by_id.txt @ 1:50a8a6917a9c draft
Uploaded update (v0.0.3) to ignore blank lines in the ID file
author | peterjc |
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date | Fri, 18 May 2012 12:25:12 -0400 |
parents | 838b9bebfa3c |
children | 28d52478ace9 |
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0:838b9bebfa3c | 1:50a8a6917a9c |
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1 Galaxy tool to select FASTA, FASTQ or SFF sequences by ID | 1 Galaxy tool to select FASTA, QUAL, FASTQ or SFF sequences by ID |
2 ========================================================= | 2 =============================================================== |
3 | 3 |
4 This tool is copyright 2011 by Peter Cock, The James Hutton Institute | 4 This tool is copyright 2011 by Peter Cock, The James Hutton Institute |
5 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. | 5 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. |
6 See the licence text below. | 6 See the licence text below. |
7 | 7 |
24 for calling sff_extract.py for converting SFF to FASTQ or FASTA + QUAL. | 24 for calling sff_extract.py for converting SFF to FASTQ or FASTA + QUAL. |
25 | 25 |
26 You will also need to modify the tools_conf.xml file to tell Galaxy to offer the | 26 You will also need to modify the tools_conf.xml file to tell Galaxy to offer the |
27 tool. One suggested location is in the filters section. Simply add the line: | 27 tool. One suggested location is in the filters section. Simply add the line: |
28 | 28 |
29 <tool file="filters/sff_select_by_id.xml" /> | 29 <tool file="filters/seq_select_by_id.xml" /> |
30 | 30 |
31 You will also need to install Biopython 1.54 or later. That's it. | 31 You will also need to install Biopython 1.54 or later. That's it. |
32 | 32 |
33 | 33 |
34 History | 34 History |
35 ======= | 35 ======= |
36 | 36 |
37 v0.0.1 - Initial version. | 37 v0.0.1 - Initial version. |
38 | 38 v0.0.3 - Ignore blank lines in input |
39 | 39 |
40 Developers | 40 Developers |
41 ========== | 41 ========== |
42 | 42 |
43 This script and related tools are being developed on the following hg branch: | 43 This script and related tools are being developed on the following hg branch: |