Mercurial > repos > peterjc > tmhmm_and_signalp

annotate test-data/k12_ten_proteins.fasta @ 20:a19b3ded8f33 draft

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v0.2.11 Job splitting fast-fail; RXLR tools supports HMMER2 from BioConda; Capture more version information; misc internal changes
author peterjc
date Thu, 21 Sep 2017 11:35:20 -0400
parents 99b82a2b1272
children
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11
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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1 >gi|16127995|ref|NP_414542.1| thr operon leader peptide [Escherichia coli str. K-12 substr. MG1655]
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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2 MKRISTTITTTITITTGNGAG
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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3 >gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I [Escherichia coli str. K-12 substr. MG1655]
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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4 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERI
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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5 FAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEA
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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6 RGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYS
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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7 AAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPC
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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8 LIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLIT
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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9 QSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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10 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSW
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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11 LKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAV
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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12 ADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELM
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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13 KFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIE
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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14 IEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFK
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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15 VKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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16 >gi|16127997|ref|NP_414544.1| homoserine kinase [Escherichia coli str. K-12 substr. MG1655]
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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17 MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEPRENIVYQCWE
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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18 RFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHY
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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19 DNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGF
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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20 IHACYSRQPELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPETAQRVA
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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21 DWLGKNYLQNQEGFVHICRLDTAGARVLEN
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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22 >gi|16127998|ref|NP_414545.1| threonine synthase [Escherichia coli str. K-12 substr. MG1655]
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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23 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILSAFIGDEIPQE
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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24 ILEERVRAAFAFPAPVANVESDVGCLELFHGPTLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAA
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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25 VAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNS
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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26 ANSINISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVP
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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27 RFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTS
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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28 EPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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29 RKLMMNHQ
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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30 >gi|16127999|ref|NP_414546.1| hypothetical protein b0005 [Escherichia coli str. K-12 substr. MG1655]
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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31 MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQHYEWRGNRWHL
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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32 HGPPPPPRHHKKAPHDHHGGHGPGKHHR
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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33 >gi|16128000|ref|NP_414547.1| peroxide resistance protein, lowers intracellular iron [Escherichia coli str. K-12 substr. MG1655]
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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34 MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGINAARFHDWQPD
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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35 FTPANARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARG
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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36 KDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKK
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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37 ARGLMSRFIIENRLTKPEQLTGFNSEGYFFDEDSSSNGELVFKRYEQR
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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38 >gi|16128001|ref|NP_414548.1| putative transporter [Escherichia coli str. K-12 substr. MG1655]
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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39 MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAA
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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40 RVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMR
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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41 WMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLVTGIILAVFTLLAITRGLHGVARLMQGFVPL
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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42 MAIIWVLTSLVICVMNIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPN
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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43 AAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAE
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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44 FVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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45 ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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46 >gi|16128002|ref|NP_414549.1| transaldolase B [Escherichia coli str. K-12 substr. MG1655]
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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47 MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSNDRAQQI
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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48 VDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGI
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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49 RAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIY
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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50 QYYKEHGYETVVMGASFRNIGEILELAGCDRLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESE
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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51 FLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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52 >gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin [Escherichia coli str. K-12 substr. MG1655]
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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53 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLV
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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54 LTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIK
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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55 ETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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56 >gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family [Escherichia coli str. K-12 substr. MG1655]
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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57 MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIFYGGIAQIFAGLLEYKKGNTFGLTAFT
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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58 SYGSFWLTLVAILLMPKLGLTDAPNAQFLGVYLGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAI
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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59 GNIAGNAAIIHFAGWIGLICGASAIYLAMGEVLNEQFGRTVLPIGESH
99b82a2b1272 Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
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60