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comparison tools/protein_analysis/signalp3.py @ 5:0f1c61998b22

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Migrated tool version 0.0.8 from old tool shed archive to new tool shed repository
author peterjc
date Tue, 07 Jun 2011 18:06:27 -0400
parents bca9bc7fdaef
children 9b45a8743100
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4:81caef04ce8b 5:0f1c61998b22
1 #!/usr/bin/env python 1 #!/usr/bin/env python
2 """Wrapper for SignalP v3.0 for use in Galaxy. 2 """Wrapper for SignalP v3.0 for use in Galaxy.
3 3
4 This script takes exactly fives command line arguments: 4 This script takes exactly five command line arguments:
5 * the organism type (euk, gram+ or gram-) 5 * the organism type (euk, gram+ or gram-)
6 * length to truncate sequences to (integer) 6 * length to truncate sequences to (integer)
7 * number of threads to use (integer) 7 * number of threads to use (integer)
8 * an input protein FASTA filename 8 * an input protein FASTA filename
9 * output tabular filename. 9 * output tabular filename.