Mercurial > repos > peterjc > tmhmm_and_signalp

comparison tools/protein_analysis/tmhmm2.py @ 11:99b82a2b1272 draft

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Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
author peterjc
date Wed, 03 Apr 2013 10:49:10 -0400
parents e52220a9ddad
children eb6ac44d4b8e
comparison
equal deleted inserted replaced
10:09ff180d1615 11:99b82a2b1272
46 from seq_analysis_utils import stop_err, split_fasta, run_jobs, thread_count 46 from seq_analysis_utils import stop_err, split_fasta, run_jobs, thread_count
47 47
48 FASTA_CHUNK = 500 48 FASTA_CHUNK = 500
49 49
50 if len(sys.argv) != 4: 50 if len(sys.argv) != 4:
51 stop_err("Require three arguments, number of threads (int), input protein FASTA file & output tabular file") 51 stop_err("Require three arguments, number of threads (int), input protein FASTA file & output tabular file")
52 52
53 num_threads = thread_count(sys.argv[1], default=4) 53 num_threads = thread_count(sys.argv[1], default=4)
54 fasta_file = sys.argv[2] 54 fasta_file = sys.argv[2]
55 tabular_file = sys.argv[3] 55 tabular_file = sys.argv[3]
56 56