Mercurial > repos > peterjc > tmhmm_and_signalp
comparison tools/protein_analysis/wolf_psort.xml @ 11:99b82a2b1272 draft
Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
author | peterjc |
---|---|
date | Wed, 03 Apr 2013 10:49:10 -0400 |
parents | e52220a9ddad |
children | 6365217cd3de |
comparison
equal
deleted
inserted
replaced
10:09ff180d1615 | 11:99b82a2b1272 |
---|---|
1 <tool id="wolf_psort" name="WoLF PSORT" version="0.0.2"> | 1 <tool id="wolf_psort" name="WoLF PSORT" version="0.0.3"> |
2 <description>Eukaryote protein subcellular localization prediction</description> | 2 <description>Eukaryote protein subcellular localization prediction</description> |
3 <command interpreter="python"> | 3 <command interpreter="python"> |
4 wolf_psort.py $organism 8 $fasta_file $tabular_file | 4 wolf_psort.py $organism 8 $fasta_file $tabular_file |
5 ##I want the number of threads to be a Galaxy config option... | 5 ##I want the number of threads to be a Galaxy config option... |
6 </command> | 6 </command> |
29 | 29 |
30 This calls the WoLF PSORT tool for prediction of eukaryote protein subcellular localization. | 30 This calls the WoLF PSORT tool for prediction of eukaryote protein subcellular localization. |
31 | 31 |
32 The input is a FASTA file of protein sequences, and the output is tabular with four columns (multiple rows per protein): | 32 The input is a FASTA file of protein sequences, and the output is tabular with four columns (multiple rows per protein): |
33 | 33 |
34 * Sequence identifier | 34 ====== =================== |
35 * Compartment | 35 Column Description |
36 * Score | 36 ------ ------------------- |
37 * Prediction rank | 37 1 Sequence identifier |
38 2 Compartment | |
39 3 Score | |
40 4 Prediction rank | |
41 ====== =================== | |
38 | 42 |
39 | 43 |
40 **Localization Compartments** | 44 **Localization Compartments** |
41 | 45 |
42 The table below gives the WoLF PSORT localization site definitions, and the corresponding Gene Ontology (GO) term. | 46 The table below gives the WoLF PSORT localization site definitions, and the corresponding Gene Ontology (GO) term. |