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comparison tools/protein_analysis/seq_analysis_utils.py @ 23:e1996f0f4e85 draft default tip

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"v0.2.13 - Python 3 fix for raising StopIteration"
author peterjc
date Thu, 17 Jun 2021 17:59:33 +0000
parents 238eae32483c
children
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22:e1afa4b0b682 23:e1996f0f4e85
17 from time import sleep 17 from time import sleep
18 18
19 if sys.version_info[0] < 3: 19 if sys.version_info[0] < 3:
20 range = xrange # noqa: F821 20 range = xrange # noqa: F821
21 21
22 __version__ = "0.0.4" 22 __version__ = "0.0.5"
23 23
24 try: 24 try:
25 from multiprocessing import cpu_count 25 from multiprocessing import cpu_count
26 except ImportError: 26 except ImportError:
27 # Must be under Python 2.5, this is copied from multiprocessing: 27 # Must be under Python 2.5, this is copied from multiprocessing:
106 raise ValueError( 106 raise ValueError(
107 "Sequence %s is length %i, max length %i" 107 "Sequence %s is length %i, max length %i"
108 % (title.split()[0], len(seq), max_len) 108 % (title.split()[0], len(seq), max_len)
109 ) 109 )
110 yield title, seq 110 yield title, seq
111 raise StopIteration
112 111
113 112
114 def split_fasta( 113 def split_fasta(
115 input_filename, 114 input_filename,
116 output_filename_base, 115 output_filename_base,