Mercurial > repos > peterjc > tmhmm_and_signalp

diff tools/protein_analysis/README @ 10:09ff180d1615 draft

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Uploaded v0.1.3 with missing HMM file for RXLR tool included.
author peterjc
date Wed, 27 Mar 2013 11:21:05 -0400
parents e52220a9ddad
children 99b82a2b1272
line wrap: on
line diff
--- a/tools/protein_analysis/README	Fri Jan 25 06:08:31 2013 -0500
+++ b/tools/protein_analysis/README	Wed Mar 27 11:21:05 2013 -0400
@@ -129,6 +129,7 @@
 v0.1.1 - Fixed an error in the header of the tabular output from Promoter
 v0.1.2 - Use the new <stdio> settings in the XML wrappers to catch errors
        - Use SGE style $NSLOTS for thread count (otherwise default to 4)
+v0.1.3 - Added missing file whisson_et_al_rxlr_eer_cropped.hmm to Tool Shed
 
 
 Developers
@@ -143,7 +144,7 @@
 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use
 the following command from the Galaxy root folder:
 
-tar -czf ~/tmhmm_signalp_etc.tar.gz tools/protein_analysis/LICENSE tools/protein_analysis/README tools/protein_analysis/suite_config.xml tools/protein_analysis/seq_analysis_utils.py tools/protein_analysis/signalp3.xml tools/protein_analysis/signalp3.py tools/protein_analysis/tmhmm2.xml tools/protein_analysis/tmhmm2.py tools/protein_analysis/promoter2.xml tools/protein_analysis/promoter2.py tools/protein_analysis/wolf_psort.xml tools/protein_analysis/wolf_psort.py tools/protein_analysis/rxlr_motifs.xml tools/protein_analysis/rxlr_motifs.py  test-data/four_human_proteins.* test-data/empty.fasta test-data/empty_tmhmm2.tabular test-data/empty_signalp3.tabular
+tar -czf ~/tmhmm_signalp_etc.tar.gz tools/protein_analysis/LICENSE tools/protein_analysis/README tools/protein_analysis/suite_config.xml tools/protein_analysis/seq_analysis_utils.py tools/protein_analysis/signalp3.xml tools/protein_analysis/signalp3.py tools/protein_analysis/tmhmm2.xml tools/protein_analysis/tmhmm2.py tools/protein_analysis/promoter2.xml tools/protein_analysis/promoter2.py tools/protein_analysis/wolf_psort.xml tools/protein_analysis/wolf_psort.py tools/protein_analysis/rxlr_motifs.xml tools/protein_analysis/rxlr_motifs.py tools/protein_analysis/whisson_et_al_rxlr_eer_cropped.hmm test-data/four_human_proteins.* test-data/empty.fasta test-data/empty_tmhmm2.tabular test-data/empty_signalp3.tabular
 
 Check this worked:
 
@@ -162,6 +163,7 @@
 tools/protein_analysis/wolf_psort.py
 tools/protein_analysis/rxlr_motifs.xml
 tools/protein_analysis/rxrl_motifs.py
+tools/protein_analysis/whisson_et_al_rxlr_eer_cropped.hmm
 test-data/four_human_proteins.fasta
 test-data/four_human_proteins.signalp3.tabular
 test-data/four_human_proteins.tmhmm2.tabular