Mercurial > repos > peterjc > tmhmm_and_signalp
diff tools/protein_analysis/tmhmm2.xml @ 2:6901298ac16c
Migrated tool version 0.0.5 from old tool shed archive to new tool shed repository
author | peterjc |
---|---|
date | Tue, 07 Jun 2011 18:04:39 -0400 |
parents | 3ff1dcbb9440 |
children | f3b373a41f81 |
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--- a/tools/protein_analysis/tmhmm2.xml Tue Jun 07 18:04:05 2011 -0400 +++ b/tools/protein_analysis/tmhmm2.xml Tue Jun 07 18:04:39 2011 -0400 @@ -1,4 +1,4 @@ -<tool id="tmhmm2" name="TMHMM 2.0" version="0.0.3"> +<tool id="tmhmm2" name="TMHMM 2.0" version="0.0.5"> <description>Find transmembrane domains in protein sequences</description> <command interpreter="python"> tmhmm2.py 8 $fasta_file $tabular_file @@ -52,7 +52,7 @@ **Notes** -The raw output from TMHMM v2.0 looks like this (six columns tab separated): +The short format output from TMHMM v2.0 looks like this (six columns tab separated, shown here as a table): =================================== ======= =========== ============= ========= ============================= gi|2781234|pdb|1JLY|B len=304 ExpAA=0.01 First60=0.00 PredHel=0 Topology=o