Mercurial > repos > peterjc > tmhmm_and_signalp

diff tools/protein_analysis/promoter2.py @ 8:976a5f2833cd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.1.1 of the bundle, which fixes an error in the header of the tabular output produced for Promoter 2.0
author peterjc
date Mon, 30 Jul 2012 12:56:54 -0400
parents 9b45a8743100
children e52220a9ddad
line wrap: on
line diff
--- a/tools/protein_analysis/promoter2.py	Mon Jul 30 10:25:07 2012 -0400
+++ b/tools/protein_analysis/promoter2.py	Mon Jul 30 12:56:54 2012 -0400
@@ -73,7 +73,6 @@
     """Parse text output into tabular, return query count."""
     identifier = None
     queries = 0
-    #out.write("#Identifier\tDescription\tPosition\tScore\tLikelihood\n")
     for line in raw_handle:
         #print repr(line)
         if not line.strip() or line == "Promoter prediction:\n":
@@ -99,7 +98,6 @@
                                   "Highly likely prediction"]:
                 stop_err("ERROR: Problem with line: %r" % line)
             out_handle.write("%s\t%s\t%s\t%s\n" % (identifier, position, score, likelihood))
-    #out.close()
     return queries
     
 working_dir, bin = get_path_and_binary()
@@ -147,7 +145,7 @@
 del jobs
 
 out_handle = open(tabular_file, "w")
-out_handle.write("#Identifier\tDescription\tPosition\tScore\tLikelihood\n")
+out_handle.write("#Identifier\tPosition\tScore\tLikelihood\n")
 queries = 0
 for temp in temp_files:
     data_handle = open(temp)