Mercurial > repos > peterjc > tmhmm_and_signalp
diff tools/protein_analysis/promoter2.xml @ 8:976a5f2833cd draft
Uploaded v0.1.1 of the bundle, which fixes an error in the header of the tabular output produced for Promoter 2.0
author | peterjc |
---|---|
date | Mon, 30 Jul 2012 12:56:54 -0400 |
parents | 9b45a8743100 |
children | e52220a9ddad |
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--- a/tools/protein_analysis/promoter2.xml Mon Jul 30 10:25:07 2012 -0400 +++ b/tools/protein_analysis/promoter2.xml Mon Jul 30 12:56:54 2012 -0400 @@ -1,4 +1,4 @@ -<tool id="promoter2" name="Promoter 2.0" version="0.0.1"> +<tool id="promoter2" name="Promoter 2.0" version="0.0.2"> <description>Find eukaryotic PolII promoters in DNA sequences</description> <!-- If job splitting is enabled, break up the query file into parts --> <!-- Using 2000 per chunk so 4 threads each doing 500 is ideal --> @@ -22,7 +22,7 @@ **What it does** -This calls the Promoter 2.0 tool for prediction of eukaryotic PolII promoters sequences using a Neural Network (NN) model. +This calls the Promoter 2.0 tool for prediction of eukaryotic PolII promoter sequences using a Neural Network (NN) model. The input is a FASTA file of nucleotide sequences (e.g. upstream regions of your genes), and the output is tabular with five columns (one row per promoter):