Mercurial > repos > peterjc > tmhmm_and_signalp
diff tools/protein_analysis/signalp3.xml @ 6:a290c6d4e658
Migrated tool version 0.0.9 from old tool shed archive to new tool shed repository
author | peterjc |
---|---|
date | Tue, 07 Jun 2011 18:07:09 -0400 |
parents | 81caef04ce8b |
children | 9b45a8743100 |
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--- a/tools/protein_analysis/signalp3.xml Tue Jun 07 18:06:27 2011 -0400 +++ b/tools/protein_analysis/signalp3.xml Tue Jun 07 18:07:09 2011 -0400 @@ -1,4 +1,4 @@ -<tool id="signalp3" name="SignalP 3.0" version="0.0.7"> +<tool id="signalp3" name="SignalP 3.0" version="0.0.8"> <description>Find signal peptides in protein sequences</description> <command interpreter="python"> signalp3.py $organism $truncate 8 $fasta_file $tabular_file @@ -124,15 +124,18 @@ Bendtsen, Nielsen, von Heijne, and Brunak. Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol., 340:783-795, 2004. +http://dx.doi.org/10.1016/j.jmb.2004.05.028 Nielsen, Engelbrecht, Brunak and von Heijne. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Engineering, 10:1-6, 1997. +http://dx.doi.org/10.1093/protein/10.1.1 Nielsen and Krogh. Prediction of signal peptides and signal anchors by a hidden Markov model. Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB 6), AAAI Press, Menlo Park, California, pp. 122-130, 1998. +http://www.ncbi.nlm.nih.gov/pubmed/9783217 http://www.cbs.dtu.dk/services/SignalP-3.0/output.php