Mercurial > repos > peterjc > tmhmm_and_signalp

diff tools/protein_analysis/tmhmm2.xml @ 6:a290c6d4e658

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Migrated tool version 0.0.9 from old tool shed archive to new tool shed repository
author peterjc
date Tue, 07 Jun 2011 18:07:09 -0400
parents f3b373a41f81
children 9b45a8743100
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--- a/tools/protein_analysis/tmhmm2.xml	Tue Jun 07 18:06:27 2011 -0400
+++ b/tools/protein_analysis/tmhmm2.xml	Tue Jun 07 18:07:09 2011 -0400
@@ -1,4 +1,4 @@
-<tool id="tmhmm2" name="TMHMM 2.0" version="0.0.6">
+<tool id="tmhmm2" name="TMHMM 2.0" version="0.0.7">
     <description>Find transmembrane domains in protein sequences</description>
     <command interpreter="python">
       tmhmm2.py 8 $fasta_file $tabular_file
@@ -76,10 +76,14 @@
 Krogh, Larsson, von Heijne, and Sonnhammer.
 Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes.
 J. Mol. Biol. 305:567-580, 2001.
+http://dx.doi.org/10.1006/jmbi.2000.4315
 
 Sonnhammer, von Heijne, and Krogh.
 A hidden Markov model for predicting transmembrane helices in protein sequences.
 In J. Glasgow et al., eds.: Proc. Sixth Int. Conf. on Intelligent Systems for Molecular Biology, pages 175-182. AAAI Press, 1998.
+http://www.ncbi.nlm.nih.gov/pubmed/9783223
+
+http://www.cbs.dtu.dk/services/TMHMM/
 
     </help>
 </tool>